Stefan Ernst Seemann
Stefan Ernst Seemann
University of Copenhagen
Verified email at rth.dk - Homepage
Title
Cited by
Cited by
Year
SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization
ND Damas, M Marcatti, C Côme, LL Christensen, MM Nielsen, ...
Nature communications 7 (1), 1-14, 2016
982016
RNA snp: efficient detection of local RNA secondary structure changes induced by SNP s
R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ...
Human mutation 34 (4), 546-556, 2013
912013
Transcriptomic landscape of lncRNAs in inflammatory bowel disease
AH Mirza, CHB Berthelsen, SE Seemann, X Pan, KS Frederiksen, ...
Genome medicine 7 (1), 39, 2015
902015
Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments
SE Seemann, J Gorodkin, R Backofen
Nucleic Acids Research 36 (20), 6355-6362, 2008
892008
The RNAsnp web server: predicting SNP effects on local RNA secondary structure
R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ...
Nucleic acids research 41 (W1), W475-W479, 2013
762013
PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences
SE Seemann, AS Richter, T Gesell, R Backofen, J Gorodkin
Bioinformatics 27 (2), 211-219, 2011
512011
The identification and functional annotation of RNA structures conserved in vertebrates
SE Seemann, AH Mirza, C Hansen, CH Bang-Berthelsen, C Garde, ...
Genome research 27 (8), 1371-1383, 2017
362017
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ...
Scientific reports 6, 34589, 2016
312016
The PETfold and PETcofold web servers for intra-and intermolecular structures of multiple RNA sequences
SE Seemann, P Menzel, R Backofen, J Gorodkin
Nucleic acids research 39 (suppl_2), W107-W111, 2011
242011
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic acids research 47 (D1), D221-D229, 2019
232019
Detection of RNA structures in porcine EST data and related mammals
SE Seemann, MJ Gilchrist, IL Hofacker, PF Stadler, J Gorodkin
BMC genomics 8 (1), 316, 2007
212007
Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domain
Z Sükösd, ES Andersen, SE Seemann, MK Jensen, M Hansen, ...
Nucleic acids research 43 (21), 10168-10179, 2015
202015
Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions
SE Seemann, AS Richter, J Gorodkin, R Backofen
Algorithms for Molecular Biology 5 (1), 22, 2010
202010
Structured RNAs and synteny regions in the pig genome
C Anthon, H Tafer, JH Havgaard, B Thomsen, J Hedegaard, SE Seemann, ...
BMC genomics 15 (1), 459, 2014
192014
RNAscClust: clustering RNA sequences using structure conservation and graph based motifs
M Miladi, A Junge, F Costa, SE Seemann, JH Havgaard, J Gorodkin, ...
Bioinformatics 33 (14), 2089-2096, 2017
162017
Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain
SE Seemann, SM Sunkin, MJ Hawrylycz, WL Ruzzo, J Gorodkin
BMC genomics 13 (1), 214, 2012
122012
RILogo: visualizing RNA–RNA interactions
P Menzel, SE Seemann, J Gorodkin
Bioinformatics 28 (19), 2523-2526, 2012
112012
Quality assessment of domesticated animal genome assemblies
SE Seemann, C Anthon, O Palasca, J Gorodkin
Bioinformatics and Biology insights 9, BBI. S29333, 2015
82015
DotAligner: identification and clustering of RNA structure motifs
MA Smith, SE Seemann, XC Quek, JS Mattick
Genome biology 18 (1), 244, 2017
72017
Sequence and expression analysis of gaps in human chromosome 20
S Minocherhomji, S Seemann, Y Mang, Z El-Schich, M Bak, C Hansen, ...
Nucleic acids research 40 (14), 6660-6672, 2012
52012
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Articles 1–20