Stefan Ernst Seemann
Stefan Ernst Seemann
Unknown affiliation
Verified email at rth.dk
TitleCited byYear
RNA snp: efficient detection of local RNA secondary structure changes induced by SNP s
R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ...
Human mutation 34 (4), 546-556, 2013
852013
Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments
SE Seemann, J Gorodkin, R Backofen
Nucleic acids research 36 (20), 6355-6362, 2008
842008
Transcriptomic landscape of lncRNAs in inflammatory bowel disease
AH Mirza, CHB Berthelsen, SE Seemann, X Pan, KS Frederiksen, ...
Genome medicine 7 (1), 39, 2015
772015
SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization
ND Damas, M Marcatti, C Côme, LL Christensen, MM Nielsen, ...
Nature communications 7, 13875, 2016
702016
The RNAsnp web server: predicting SNP effects on local RNA secondary structure
R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ...
Nucleic acids research 41 (W1), W475-W479, 2013
662013
PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences
SE Seemann, AS Richter, T Gesell, R Backofen, J Gorodkin
Bioinformatics 27 (2), 211-219, 2010
512010
The identification and functional annotation of RNA structures conserved in vertebrates
SE Seemann, AH Mirza, C Hansen, CH Bang-Berthelsen, C Garde, ...
Genome research 27 (8), 1371-1383, 2017
332017
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ...
Scientific reports 6, 34589, 2016
282016
The PETfold and PETcofold web servers for intra-and intermolecular structures of multiple RNA sequences
SE Seemann, P Menzel, R Backofen, J Gorodkin
Nucleic acids research 39 (suppl_2), W107-W111, 2011
232011
Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domain
Z Sükösd, ES Andersen, SE Seemann, MK Jensen, M Hansen, ...
Nucleic acids research 43 (21), 10168-10179, 2015
202015
Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions
SE Seemann, AS Richter, J Gorodkin, R Backofen
Algorithms for Molecular Biology 5 (1), 22, 2010
202010
Detection of RNA structures in porcine EST data and related mammals
SE Seemann, MJ Gilchrist, IL Hofacker, PF Stadler, J Gorodkin
BMC genomics 8 (1), 316, 2007
202007
Structured RNAs and synteny regions in the pig genome
C Anthon, H Tafer, JH Havgaard, B Thomsen, J Hedegaard, SE Seemann, ...
BMC genomics 15 (1), 459, 2014
192014
RNAscClust : clustering RNA sequences using structure conservation and graph based motifs
M Miladi, A Junge, F Costa, SE Seemann, JH Havgaard, J Gorodkin, ...
Bioinformatics 33 (14), 2089-2096, 2017
142017
Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain
SE Seemann, SM Sunkin, MJ Hawrylycz, WL Ruzzo, J Gorodkin
BMC genomics 13 (1), 214, 2012
122012
RILogo: visualizing RNA–RNA interactions
P Menzel, SE Seemann, J Gorodkin
Bioinformatics 28 (19), 2523-2526, 2012
112012
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic acids research 47 (D1), D221-D229, 2018
72018
Quality assessment of domesticated animal genome assemblies
SE Seemann, C Anthon, O Palasca, J Gorodkin
Bioinformatics and Biology insights 9, BBI. S29333, 2015
72015
DotAligner: identification and clustering of RNA structure motifs
MA Smith, SE Seemann, XC Quek, JS Mattick
Genome biology 18 (1), 244, 2017
52017
Optimizing RNA structures by sequence extensions using RNAcop
N Hecker, M Christensen-Dalsgaard, SE Seemann, JH Havgaard, ...
Nucleic acids research 43 (17), 8135-8145, 2015
42015
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Articles 1–20