| Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5′ terminal nucleotide S Mi, T Cai, Y Hu, Y Chen, E Hodges, F Ni, L Wu, S Li, H Zhou, C Long, ... Cell 133 (1), 116-127, 2008 | 1435 | 2008 |
| Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes OH Tam, AA Aravin, P Stein, A Girard, EP Murchison, S Cheloufi, ... Nature 453 (7194), 534-538, 2008 | 1267 | 2008 |
| Genome-wide in situ exon capture for selective resequencing E Hodges, Z Xuan, V Balija, M Kramer, MN Molla, SW Smith, CM Middle, ... Nature genetics 39 (12), 1522-1527, 2007 | 873 | 2007 |
| Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ... Nature 450 (7167), 219-232, 2007 | 714 | 2007 |
| Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates A Molaro, E Hodges, F Fang, Q Song, WR McCombie, GJ Hannon, ... Cell 146 (6), 1029-1041, 2011 | 407 | 2011 |
| Targeted investigation of the Neandertal genome by array-based sequence capture HA Burbano, E Hodges, RE Green, AW Briggs, J Krause, M Meyer, ... science 328 (5979), 723-725, 2010 | 361 | 2010 |
| Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment E Hodges, A Molaro, CO Dos Santos, P Thekkat, Q Song, PJ Uren, J Park, ... Molecular cell 44 (1), 17-28, 2011 | 335 | 2011 |
| Site identification in high-throughput RNA–protein interaction data PJ Uren, E Bahrami-Samani, SC Burns, M Qiao, FV Karginov, E Hodges, ... Bioinformatics 28 (23), 3013-3020, 2012 | 295 | 2012 |
| High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing E Hodges, AD Smith, J Kendall, Z Xuan, K Ravi, M Rooks, MQ Zhang, ... Genome research 19 (9), 1593-1605, 2009 | 276 | 2009 |
| A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands A Stark, N Bushati, CH Jan, P Kheradpour, E Hodges, J Brennecke, ... Genes & development 22 (1), 8-13, 2008 | 271 | 2008 |
| Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing E Hodges, M Rooks, Z Xuan, A Bhattacharjee, D Benjamin Gordon, ... Nature protocols 4 (6), 960-974, 2009 | 222 | 2009 |
| Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes A Stark, P Kheradpour, L Parts, J Brennecke, E Hodges, GJ Hannon, ... Genome research 17 (12), 1865-1879, 2007 | 220 | 2007 |
| Updates to the RMAP short-read mapping software AD Smith, WY Chung, E Hodges, J Kendall, G Hannon, J Hicks, Z Xuan, ... Bioinformatics 25 (21), 2841-2842, 2009 | 215 | 2009 |
| Exome sequencing and disease-network analysis of a single family implicate a mutation in KIF1A in hereditary spastic paraparesis Y Erlich, S Edvardson, E Hodges, S Zenvirt, P Thekkat, A Shaag, T Dor, ... Genome research 21 (5), 658-664, 2011 | 206 | 2011 |
| Mutations in the RNA granule component TDRD7 cause cataract and glaucoma SA Lachke, FS Alkuraya, SC Kneeland, T Ohn, A Aboukhalil, GR Howell, ... Science 331 (6024), 1571-1576, 2011 | 206 | 2011 |
| Mutational landscape of EGFR-, MYC-, and Kras-driven genetically engineered mouse models of lung adenocarcinoma DG McFadden, K Politi, A Bhutkar, FK Chen, X Song, M Pirun, ... Proceedings of the National Academy of Sciences 113 (42), E6409-E6417, 2016 | 185 | 2016 |
| Two waves of de novo methylation during mouse germ cell development A Molaro, I Falciatori, E Hodges, AA Aravin, K Marran, S Rafii, ... Genes & development 28 (14), 1544-1549, 2014 | 147 | 2014 |
| Genomic landscape of human allele-specific DNA methylation F Fang, E Hodges, A Molaro, M Dean, GJ Hannon, AD Smith Proceedings of the National Academy of Sciences 109 (19), 7332-7337, 2012 | 130 | 2012 |
| Evolutionary flux of canonical microRNAs and mirtrons in Drosophila E Berezikov, N Liu, AS Flynt, E Hodges, M Rooks, GJ Hannon, EC Lai Nature genetics 42 (1), 6-9, 2010 | 119 | 2010 |
| An epigenetic memory of pregnancy in the mouse mammary gland CO Dos Santos, E Dolzhenko, E Hodges, AD Smith, GJ Hannon Cell reports 11 (7), 1102-1109, 2015 | 111 | 2015 |
