Zhiping Weng
Zhiping Weng
Director, Professor of Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School
Verified email at umassmed.edu - Homepage
TitleCited byYear
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
84662012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
Nature 447 (7146), 799, 2007
47572007
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
ND Heintzman, RK Stuart, G Hon, Y Fu, CW Ching, RD Hawkins, ...
Nature genetics 39 (3), 311, 2007
25712007
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature biotechnology 23 (1), 137, 2005
14282005
A global map of p53 transcription-factor binding sites in the human genome
CL Wei, Q Wu, VB Vega, KP Chiu, P Ng, T Zhang, A Shahab, HC Yong, ...
Cell 124 (1), 207-219, 2006
11882006
ZDOCK: an initial‐stage protein‐docking algorithm
R Chen, L Li, Z Weng
Proteins: Structure, Function, and Bioinformatics 52 (1), 80-87, 2003
11632003
High-resolution mapping and characterization of open chromatin across the genome
AP Boyle, S Davis, HP Shulha, P Meltzer, EH Margulies, Z Weng, ...
Cell 132 (2), 311-322, 2008
10162008
Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals
BR Carone, L Fauquier, N Habib, JM Shea, CE Hart, R Li, C Bock, C Li, ...
Cell 143 (7), 1084-1096, 2010
7922010
Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells
M Ghildiyal, H Seitz, MD Horwich, C Li, T Du, S Lee, J Xu, ELW Kittler, ...
Science 320 (5879), 1077-1081, 2008
6262008
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ...
Genome research 22 (9), 1798-1812, 2012
5872012
ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers
BG Pierce, K Wiehe, H Hwang, BH Kim, T Vreven, Z Weng
Bioinformatics 30 (12), 1771-1773, 2014
5062014
Defining functional DNA elements in the human genome
M Kellis, B Wold, MP Snyder, BE Bernstein, A Kundaje, GK Marinov, ...
Proceedings of the National Academy of Sciences 111 (17), 6131-6138, 2014
4752014
Global mapping of c-Myc binding sites and target gene networks in human B cells
KI Zeller, XD Zhao, CWH Lee, KP Chiu, F Yao, JT Yustein, HS Ooi, ...
Proceedings of the National Academy of Sciences 103 (47), 17834-17839, 2006
4682006
Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies
C Li, VV Vagin, S Lee, J Xu, S Ma, H Xi, H Seitz, MD Horwich, M Syrzycka, ...
Cell 137 (3), 509-521, 2009
4472009
Detection of functional DNA motifs via statistical over‐representation
MC Frith, Y Fu, L Yu, JF Chen, U Hansen, Z Weng
Nucleic acids research 32 (4), 1372-1381, 2004
4422004
Target RNA–directed trimming and tailing of small silencing RNAs
SL Ameres, MD Horwich, JH Hung, J Xu, M Ghildiyal, Z Weng, PD Zamore
Science 328 (5985), 1534-1539, 2010
4202010
The landscape of histone modifications across 1% of the human genome in five human cell lines
CM Koch, RM Andrews, P Flicek, SC Dillon, U Kara÷z, GK Clelland, ...
Genome research 17 (6), 691-707, 2007
4192007
A compendium of gene expression in normal human tissues
LL Hsiao, F Dangond, T Yoshida, R Hong, RV Jensen, J Misra, W Dillon, ...
Physiological genomics 7 (2), 97-104, 2001
4192001
Unsupervised pattern discovery in human chromatin structure through genomic segmentation
MM Hoffman, OJ Buske, J Wang, Z Weng, JA Bilmes, WS Noble
Nature methods 9 (5), 473, 2012
4092012
Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells
O Yildirim, R Li, JH Hung, PB Chen, X Dong, LS Ee, Z Weng, OJ Rando, ...
Cell 147 (7), 1498-1510, 2011
3732011
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