Zhiping Weng
Zhiping Weng
Director, Professor of Program in Bioinformatics and Integrative Biology, University of
Verified email at umassmed.edu - Homepage
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
10817*2012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
nature 447 (7146), 799, 2007
51612007
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
ND Heintzman, RK Stuart, G Hon, Y Fu, CW Ching, RD Hawkins, ...
Nature genetics 39 (3), 311-318, 2007
29732007
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature biotechnology 23 (1), 137-144, 2005
14802005
ZDOCK: an initial‐stage protein‐docking algorithm
R Chen, L Li, Z Weng
Proteins: Structure, Function, and Bioinformatics 52 (1), 80-87, 2003
12842003
A global map of p53 transcription-factor binding sites in the human genome
CL Wei, Q Wu, VB Vega, KP Chiu, P Ng, T Zhang, A Shahab, HC Yong, ...
Cell 124 (1), 207-219, 2006
12712006
High-resolution mapping and characterization of open chromatin across the genome
AP Boyle, S Davis, HP Shulha, P Meltzer, EH Margulies, Z Weng, ...
Cell 132 (2), 311-322, 2008
11912008
Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals
BR Carone, L Fauquier, N Habib, JM Shea, CE Hart, R Li, C Bock, C Li, ...
Cell 143 (7), 1084-1096, 2010
9422010
ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers
BG Pierce, K Wiehe, H Hwang, BH Kim, T Vreven, Z Weng
Bioinformatics 30 (12), 1771-1773, 2014
7392014
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ...
Genome research 22 (9), 1798-1812, 2012
7272012
Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells
M Ghildiyal, H Seitz, MD Horwich, C Li, T Du, S Lee, J Xu, ELW Kittler, ...
Science 320 (5879), 1077-1081, 2008
6902008
Defining functional DNA elements in the human genome
M Kellis, B Wold, MP Snyder, BE Bernstein, A Kundaje, GK Marinov, ...
Proceedings of the National Academy of Sciences 111 (17), 6131-6138, 2014
6132014
The TREM2-APOE pathway drives the transcriptional phenotype of dysfunctional microglia in neurodegenerative diseases
S Krasemann, C Madore, R Cialic, C Baufeld, N Calcagno, R El Fatimy, ...
Immunity 47 (3), 566-581. e9, 2017
6012017
Therapeutic genome editing by combined viral and non-viral delivery of CRISPR system components in vivo
H Yin, CQ Song, JR Dorkin, LJ Zhu, Y Li, Q Wu, A Park, J Yang, S Suresh, ...
Nature biotechnology 34 (3), 328-333, 2016
5332016
Global mapping of c-Myc binding sites and target gene networks in human B cells
KI Zeller, XD Zhao, CWH Lee, KP Chiu, F Yao, JT Yustein, HS Ooi, ...
Proceedings of the National Academy of Sciences 103 (47), 17834-17839, 2006
5272006
Unsupervised pattern discovery in human chromatin structure through genomic segmentation
MM Hoffman, OJ Buske, J Wang, Z Weng, JA Bilmes, WS Noble
Nature methods 9 (5), 473, 2012
5222012
Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies
C Li, VV Vagin, S Lee, J Xu, S Ma, H Xi, H Seitz, MD Horwich, M Syrzycka, ...
Cell 137 (3), 509-521, 2009
4962009
Target RNA–directed trimming and tailing of small silencing RNAs
SL Ameres, MD Horwich, JH Hung, J Xu, M Ghildiyal, Z Weng, PD Zamore
Science 328 (5985), 1534-1539, 2010
4902010
Detection of functional DNA motifs via statistical over‐representation
MC Frith, Y Fu, L Yu, JF Chen, U Hansen, Z Weng
Nucleic acids research 32 (4), 1372-1381, 2004
4652004
The landscape of histone modifications across 1% of the human genome in five human cell lines
CM Koch, RM Andrews, P Flicek, SC Dillon, U Kara÷z, GK Clelland, ...
Genome research 17 (6), 691-707, 2007
4592007
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