Matthew D. Rasmussen
Matthew D. Rasmussen
Cornell University
Verified email at alum.mit.edu - Homepage
TitleCited byYear
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
Nature 450 (7167), 203, 2007
17772007
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476, 2011
8412011
Evolution of pathogenicity and sexual reproduction in eight Candida genomes
G Butler, MD Rasmussen, MF Lin, MAS Santos, S Sakthikumar, CA Munro, ...
Nature 459 (7247), 657, 2009
8062009
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355, 2014
7642014
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ...
Nature 450 (7167), 219, 2007
6182007
Genome-wide inference of ancestral recombination graphs
MD Rasmussen, MJ Hubisz, I Gronau, A Siepel
PLoS genetics 10 (5), e1004342, 2014
1432014
Unified modeling of gene duplication, loss, and coalescence using a locus tree
MD Rasmussen, M Kellis
Genome research 22 (4), 755-765, 2012
1102012
A Bayesian approach for fast and accurate gene tree reconstruction
MD Rasmussen, M Kellis
Molecular Biology and Evolution 28 (1), 273-290, 2010
992010
gcluto: An interactive clustering, visualization, and analysis system
M Rasmussen, G Karypis
UMN-CS TR-04 21 (7), 2004
962004
Effects of triptorelin versus placebo on the symptoms of endometriosis
MD Agneta Bergqvist, MD Thorbjörn Bergh, L Hogström, S Mattsson, ...
Fertility and sterility 69 (4), 702-708, 1998
951998
Accurate gene-tree reconstruction by learning gene-and species-specific substitution rates across multiple complete genomes
MD Rasmussen, M Kellis
Genome research 17 (12), 1932-1942, 2007
922007
TreeFix: statistically informed gene tree error correction using species trees
YC Wu, MD Rasmussen, MS Bansal, M Kellis
Systematic biology 62 (1), 110-120, 2012
802012
Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes
MF Lin, AN Deoras, MD Rasmussen, M Kellis
PLoS computational biology 4 (4), e1000067, 2008
512008
Evolution at the Subgene Level: Domain Rearrangements in the Drosophila Phylogeny
YC Wu, MD Rasmussen, M Kellis
Molecular biology and evolution 29 (2), 689-705, 2011
382011
Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees
YC Wu, MD Rasmussen, MS Bansal, M Kellis
Genome research 24 (3), 475-486, 2014
372014
Replacing and Additive Horizontal Gene Transfer in Streptococcus
SC Choi, MD Rasmussen, MJ Hubisz, I Gronau, MJ Stanhope, A Siepel
Molecular biology and evolution 29 (11), 3309-3320, 2012
262012
wCLUTO: a Web-enabled clustering toolkit
MD Rasmussen, MS Deshpande, G Karypis, J Johnson, JA Crow, ...
Plant physiology 133 (2), 510-516, 2003
262003
Roles of major facilitator superfamily transporters in phosphate response in Drosophila
C Bergwitz, MD Rasmussen, C DeRobertis, MJ Wee, S Sinha, HH Chen, ...
PloS one 7 (2), e31730, 2012
232012
Harvard FlyBase curators; Berkeley Drosophila Genome Project (2007) Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ...
Nature 450 (7167), 219-232, 2007
232007
Ancestor-to-ancestor relationship linking methods and systems
M Rasmussen, H Madsen, G Mangum
US Patent 8,786,603, 2014
152014
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