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Rory Kirchner
Rory Kirchner
Patch Biosciences
Verified email at alum.mit.edu - Homepage
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Cited by
Year
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
7892018
GEMINI: integrative exploration of genetic variation and genome annotations
U Paila, BA Chapman, R Kirchner, AR Quinlan
PLoS computational biology 9 (7), e1003153, 2013
4702013
ALS-implicated protein TDP-43 sustains levels of STMN2, a mediator of motor neuron growth and repair
JR Klim, LA Williams, F Limone, I Guerra San Juan, BN Davis-Dusenbery, ...
Nature neuroscience 22 (2), 167-179, 2019
3922019
A cell atlas of the adult Drosophila midgut
RJ Hung, Y Hu, R Kirchner, Y Liu, C Xu, A Comjean, SG Tattikota, F Li, ...
Proceedings of the National Academy of Sciences 117 (3), 1514-1523, 2020
1962020
A family of non-GPCR chemosensors defines an alternative logic for mammalian olfaction
PL Greer, DM Bear, JM Lassance, ML Bloom, T Tsukahara, ...
Cell 165 (7), 1734-1748, 2016
1572016
Subcellular transcriptomes and proteomes of developing axon projections in the cerebral cortex
A Poulopoulos, AJ Murphy, A Ozkan, P Davis, J Hatch, R Kirchner, ...
Nature 565 (7739), 356-360, 2019
1352019
High-throughput functional comparison of promoter and enhancer activities
TA Nguyen, RD Jones, AR Snavely, AR Pfenning, R Kirchner, M Hemberg, ...
Genome research 26 (8), 1023-1033, 2016
1212016
Hepatocyte stress increases expression of yes‐associated protein and transcriptional coactivator with PDZ‐binding motif in hepatocytes to promote parenchymal inflammation and …
M Mooring, BH Fowl, SZC Lum, YE Liu, K Yao, S Softic, R Kirchner, ...
Hepatology 71 (5), 1813-1830, 2020
1082020
Single-cell transcriptomics of the developing lateral geniculate nucleus reveals insights into circuit assembly and refinement
BT Kalish, L Cheadle, S Hrvatin, MA Nagy, S Rivera, M Crow, J Gillis, ...
Proceedings of the National Academy of Sciences 115 (5), E1051-E1060, 2018
702018
A diencephalic dopamine source provides input to the superior colliculus, where D1 and D2 receptors segregate to distinct functional zones
AD Bolton, Y Murata, R Kirchner, SY Kim, A Young, T Dang, Y Yanagawa, ...
Cell reports 13 (5), 1003-1015, 2015
682015
Sequencing of captive target transcripts identifies the network of regulated genes and functions of primate-specific miR-522
SM Tan, R Kirchner, J Jin, O Hofmann, L McReynolds, W Hide, ...
Cell reports 8 (4), 1225-1239, 2014
642014
HIV integration site analysis of cellular models of HIV latency with a probe-enriched next-generation sequencing assay
S Sunshine, R Kirchner, SS Amr, L Mansur, R Shakhbatyan, M Kim, ...
Journal of virology 90 (9), 4511-4519, 2016
622016
Whole‐genome sequencing reveals new Alzheimer's disease–associated rare variants in loci related to synaptic function and neuronal development
D Prokopenko, SL Morgan, K Mullin, O Hofmann, B Chapman, R Kirchner, ...
Alzheimer's & Dementia 17 (9), 1509-1527, 2021
582021
edgeRun: an R package for sensitive, functionally relevant differential expression discovery using an unconditional exact test
E Dimont, J Shi, R Kirchner, W Hide
Bioinformatics 31 (15), 2589-2590, 2015
482015
Herpesviral lytic gene functions render the viral genome susceptible to novel editing by CRISPR/Cas9
HS Oh, WM Neuhausser, P Eggan, M Angelova, R Kirchner, KC Eggan, ...
Elife 8, e51662, 2019
412019
An RNA-binding protein, Lin28, recognizes and remodels G-quartets in the microRNAs (miRNAs) and mRNAs it regulates
E O'Day, MTN Le, S Imai, SM Tan, R Kirchner, H Arthanari, O Hofmann, ...
Journal of Biological Chemistry 290 (29), 17909-17922, 2015
412015
Transcriptional response to Wnt activation regulates the regenerative capacity of the mammalian cochlea
A Samarajeewa, DR Lenz, L Xie, H Chiang, R Kirchner, JF Mulvaney, ...
Development 145 (23), dev166579, 2018
402018
Basal-A triple-negative breast cancer cells selectively rely on RNA splicing for survival
S Chan, P Sridhar, R Kirchner, YJ Lock, Z Herbert, S Buonamici, P Smith, ...
Molecular cancer therapeutics 16 (12), 2849-2861, 2017
402017
In Vitro Effects of Lead on Gene Expression in Neural Stem Cells and Associations between Up-regulated Genes and Cognitive Scores in Children
PJ Wagner, HR Park, Z Wang, R Kirchner, Y Wei, L Su, K Stanfield, ...
Environmental health perspectives 125 (4), 721-729, 2017
392017
Silencing of the Drosophila ortholog of SOX5 leads to abnormal neuronal development and behavioral impairment
A Li, B Hooli, K Mullin, RE Tate, A Bubnys, R Kirchner, B Chapman, ...
Human Molecular Genetics 26 (8), 1472-1482, 2017
352017
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