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John "Jack" Kamm
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Robust and scalable inference of population history from hundreds of unphased whole genomes
J Terhorst, JA Kamm, YS Song
Nature genetics 49 (2), 303-309, 2017
6142017
Insights into human genetic variation and population history from 929 diverse genomes
A Bergström, SA McCarthy, R Hui, MA Almarri, Q Ayub, P Danecek, ...
Science 367 (6484), eaay5012, 2020
5852020
The first horse herders and the impact of early Bronze Age steppe expansions into Asia
P de Barros Damgaard, R Martiniano, J Kamm, JV Moreno-Mayar, ...
Science 360 (6396), eaar7711, 2018
3862018
Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans
JV Moreno-Mayar, BA Potter, L Vinner, M Steinrücken, S Rasmussen, ...
Nature 553 (7687), 203-207, 2018
3372018
Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses
E Mick, J Kamm, AO Pisco, K Ratnasiri, JM Babik, G Castañeda, ...
Nature communications 11 (1), 5854, 2020
1252020
Efficiently inferring the demographic history of many populations with allele count data
J Kamm, J Terhorst, R Durbin, YS Song
Journal of the American Statistical Association 115 (531), 1472-1487, 2020
1252020
Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19
SJ Shah, PN Barish, PA Prasad, A Kistler, N Neff, J Kamm, LM Li, CY Chiu, ...
EClinicalMedicine 27, 2020
812020
Efficient computation of the joint sample frequency spectra for multiple populations
JA Kamm, J Terhorst, YS Song
Journal of Computational and Graphical Statistics 26 (1), 182-194, 2017
792017
SARS-CoV-2 community transmission during shelter-in-place in San Francisco
G Chamie, C Marquez, E Crawford, J Peng, M Petersen, D Schwab, ...
Medrxiv, 2020.06. 15.20132233, 2020
762020
Inference of complex population histories using whole-genome sequences from multiple populations
M Steinrücken, J Kamm, JP Spence, YS Song
Proceedings of the National Academy of Sciences 116 (34), 17115-17120, 2019
762019
Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by reverse transcription-PCR
M Vanaerschot, SA Mann, JT Webber, J Kamm, SM Bell, J Bell, SN Hong, ...
Journal of Clinical Microbiology 59 (1), 10.1128/jcm. 02369-20, 2020
682020
Model‐based detection and analysis of introgressed Neanderthal ancestry in modern humans
M Steinrücken, JP Spence, JA Kamm, E Wieczorek, YS Song
Molecular ecology 27 (19), 3873-3888, 2018
672018
Sepsis attributed to bacterial contamination of platelets associated with a potential common source—multiple states, 2018
SA Jones
MMWR. Morbidity and mortality weekly report 68, 2019
542019
Community transmission of severe acute respiratory syndrome coronavirus 2 disproportionately affects the Latinx population during shelter-in-place in San Francisco
G Chamie, C Marquez, E Crawford, J Peng, M Petersen, D Schwab, ...
Clinical Infectious Diseases 73 (Supplement_2), S127-S135, 2021
512021
Two-locus likelihoods under variable population size and fine-scale recombination rate estimation
JA Kamm, JP Spence, J Chan, YS Song
Genetics 203 (3), 1381-1399, 2016
502016
The site frequency spectrum for general coalescents
JP Spence, JA Kamm, YS Song
Genetics 202 (4), 1549-1561, 2016
412016
Complete genome sequence of a novel coronavirus (SARS-CoV-2) isolate from Bangladesh
S Saha, R Malaker, MSI Sajib, M Hasanuzzaman, H Rahman, ZB Ahmed, ...
Microbiology resource announcements 9 (24), 10.1128/mra. 00568-20, 2020
382020
Investigating transfusion-related sepsis using culture-independent metagenomic sequencing
E Crawford, J Kamm, S Miller, LM Li, S Caldera, A Lyden, D Yokoe, ...
Clinical Infectious Diseases 71 (5), 1179-1185, 2020
312020
Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics
A Tsitsiklis, CM Osborne, J Kamm, K Williamson, K Kalantar, G Dudas, ...
The Lancet Microbe 3 (4), e284-e293, 2022
302022
Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: a comparison of patients with and without COVID-19
SJ Shah, PN Barish, PA Prasad, A Kistler, N Neff, J Kamm, LM Li, CY Chiu, ...
medRxiv, 2020
262020
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