Daniel D Sommer
Daniel D Sommer
National Biodefense Analysis and Countermeasures Center
Verified email at nbacc.dhs.gov
Title
Cited by
Cited by
Year
Structure, function and diversity of the healthy human microbiome
C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ...
nature 486 (7402), 207, 2012
56762012
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
nature 486 (7402), 215, 2012
14422012
Minimus: a fast, lightweight genome assembler
DD Sommer, AL Delcher, SL Salzberg, M Pop
BMC bioinformatics 8 (1), 64, 2007
4552007
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99 A
SL Salzberg, DD Sommer, MC Schatz, AM Phillippy, PD Rabinowicz, ...
BMC genomics 9 (1), 1-16, 2008
3522008
Deep sequencing of the oral microbiome reveals signatures of periodontal disease
B Liu, LL Faller, N Klitgord, V Mazumdar, M Ghodsi, DD Sommer, ...
PloS one 7 (6), e37919, 2012
3192012
Next generation sequence assembly with AMOS
TJ Treangen, DD Sommer, FE Angly, S Koren, M Pop
Current Protocols in Bioinformatics 33 (1), 11.8. 1-11.8. 18, 2011
1922011
Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.
AJ Bogdanove, R Koebnik, H Lu, A Furutani, SV Angiuoli, PB Patil, ...
Journal of Bacteriology 193 (19), 5450-5464, 2011
1772011
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
TJ Treangen, S Koren, DD Sommer, B Liu, I Astrovskaya, B Ondov, ...
Genome biology 14 (1), R2, 2013
1592013
Genomic characterization of the Yersinia genus
PE Chen, C Cook, AC Stewart, N Nagarajan, DD Sommer, M Pop, ...
Genome biology 11 (1), R1, 2010
1012010
Comprehensive DNA signature discovery and validation
AM Phillippy, JA Mason, K Ayanbule, DD Sommer, E Taviani, A Huq, ...
PLoS Comput Biol 3 (5), e98, 2007
792007
Gene-boosted assembly of a novel bacterial genome from very short reads
SL Salzberg, DD Sommer, D Puiu, VT Lee
PLoS Comput Biol 4 (9), e1000186, 2008
692008
Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies
MC Schatz, AM Phillippy, DD Sommer, AL Delcher, D Puiu, G Narzisi, ...
Briefings in bioinformatics 14 (2), 213-224, 2013
532013
Genome sequence of the Wolbachia endosymbiont of Culex quinquefasciatus JHB
SL Salzberg, D Puiu, DD Sommer, V Nene, NH Lee
Journal of bacteriology 191 (5), 1725-1725, 2009
532009
De novo likelihood-based measures for comparing genome assemblies
M Ghodsi, CM Hill, I Astrovskaya, H Lin, DD Sommer, S Koren, M Pop
BMC research notes 6 (1), 334, 2013
472013
De novo assembly of large genomes using cloud computing
MC Schatz, D Sommer, D Kelley, M Pop
Proceedings of the Cold Spring Harbor Biology of Genomes Conference, 2010
472010
Prevalence of the erm (T) gene in clinical isolates of erythromycin-resistant group D Streptococcus and Enterococcus
LP DiPersio, JR DiPersio, KC Frey, JA Beach
Antimicrobial agents and chemotherapy 52 (4), 1567-1569, 2008
192008
MetAMOS: a metagenomic assembly and analysis pipeline for AMOS
TJ Treangen, S Koren, I Astrovskaya, D Sommer, B Liu, M Pop
Genome Biology 12 (S1), P25, 2011
142011
Biological sexing of a 4000-year-old Egyptian mummy head to assess the potential of nuclear DNA recovery from the most damaged and limited forensic specimens
O Loreille, S Ratnayake, AL Bazinet, TB Stockwell, DD Sommer, ...
Genes 9 (3), 135, 2018
132018
BLAST-based validation of metagenomic sequence assignments
AL Bazinet, BD Ondov, DD Sommer, S Ratnayake
PeerJ 6, e4892, 2018
72018
Sequence-based predictions of lipooligosaccharide diversity in the Neisseriaceae and their implication in pathogenicity
DC Stein, CJ Miller, SV Bhoopalan, DD Sommer
PLoS One 6 (4), e18923, 2011
72011
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Articles 1–20