| PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees B Ribeiro-Gonçalves, AP Francisco, C Vaz, M Ramirez, JA Carriço Nucleic acids research 44 (W1), W246-W251, 2016 | 72 | 2016 |
| INNUENDO: a cross‐sectoral platform for the integration of genomics in the surveillance of food‐borne pathogens AK Llarena, BF Ribeiro‐Gonçalves, D Nuno Silva, J Halkilahti, ... EFSA Supporting Publications 15 (11), 1498E, 2018 | 28 | 2018 |
| Citrobacter portucalensis sp. nov., isolated from an aquatic sample TG Ribeiro, BR Goncalves, MLS da Silva, Â Novais, E Machado, ... International journal of systematic and evolutionary microbiology 67 (9 …, 2017 | 17 | 2017 |
| Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data TF Jesus, B Ribeiro-Gonçalves, DN Silva, V Bortolaia, M Ramirez, ... Nucleic acids research 47 (D1), D188-D194, 2019 | 14 | 2019 |
| A widespread family of polymorphic toxins encoded by temperate phages A Jamet, M Touchon, B Ribeiro-Gonçalves, JA Carriço, A Charbit, ... BMC biology 15 (1), 1-12, 2017 | 12 | 2017 |
| Epidemiological surveillance and typing methods to track antibiotic resistant strains using high throughput sequencing MP Machado, B Ribeiro-Gonçalves, M Silva, M Ramirez, JA Carriço Antibiotics, 331-356, 2017 | 9 | 2017 |
| INNUENDO whole genome and core genome MLST schemas and datasets for Campylobacter jejuni M Rossi, MSD Silva, BF Ribeiro-Gonçalves, DN Silva, MP Machado, ... Zenodo, 2018 | 7 | 2018 |
| Fast phylogenetic inference from typing data JA Carriço, M Crochemore, AP Francisco, SP Pissis, B Ribeiro-Gonçalves, ... Algorithms for Molecular Biology 13 (1), 1-14, 2018 | 6 | 2018 |
| Beta-hemolytic Streptococcus dysgalactiae strains isolated from horses are a genetically distinct population within the Streptococcus dysgalactiae taxon MD Pinho, E Erol, B Ribeiro-Gonçalves, CI Mendes, JA Carriço, SC Matos, ... Scientific reports 6 (1), 1-9, 2016 | 6 | 2016 |
| BacPipe: A Rapid, User-Friendly Whole-Genome Sequencing Pipeline for Clinical Diagnostic Bacteriology BB Xavier, M Mysara, M Bolzan, B Ribeiro-Gonçalves, BTF Alako, ... Iscience 23 (1), 100769, 2020 | 5 | 2020 |
| Tracing Mycobacterium tuberculosis transmission by whole genome sequencing in a high incidence setting: a retrospective population-based study in East Greenland MK Taha, H Claus, M Lappann, FJ Veyrier, A Otto, D Becher, ... Journal of Clinical Microbiology 53 (8), 2716-2719, 0 | | |
