Timothy Bailey
Timothy Bailey
Verified email at unr.edu - Homepage
TitleCited byYear
Fitting a mixture model by expectation maximization to discover motifs in bipolymers
TL Bailey, C Elkan
Department of Computer Science and Engineering, University of California …, 1994
46501994
MEME Suite: tools for motif discovery and searching
TL Bailey, M Boden, FA Buske, M Frith, CE Grant, L Clementi, J Ren, ...
Nucleic acids research 37 (suppl_2), W202-W208, 2009
41142009
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
Science 309 (5740), 1559-1563, 2005
31282005
MEME: discovering and analyzing DNA and protein sequence motifs
TL Bailey, N Williams, C Misleh, WW Li
Nucleic acids research 34 (suppl_2), W369-W373, 2006
18262006
FIMO: scanning for occurrences of a given motif
CE Grant, TL Bailey, WS Noble
Bioinformatics 27 (7), 1017-1018, 2011
15012011
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature biotechnology 23 (1), 137, 2005
14422005
Combining evidence using p-values: application to sequence homology searches.
TL Bailey, M Gribskov
Bioinformatics (Oxford, England) 14 (1), 48-54, 1998
11731998
Quantifying similarity between motifs
S Gupta, JA Stamatoyannopoulos, TL Bailey, WS Noble
Genome biology 8 (2), R24, 2007
9972007
Unsupervised learning of multiple motifs in biopolymers using expectation maximization
TL Bailey, C Elkan
Machine learning 21 (1-2), 51-80, 1995
8591995
MEME-ChIP: motif analysis of large DNA datasets
P Machanick, TL Bailey
Bioinformatics 27 (12), 1696-1697, 2011
8422011
The value of prior knowledge in discovering motifs with MEME.
TL Bailey, C Elkan
Ismb 3, 21-29, 1995
7861995
DREME: motif discovery in transcription factor ChIP-seq data
TL Bailey
Bioinformatics 27 (12), 1653-1659, 2011
6662011
The MEME suite
TL Bailey, J Johnson, CE Grant, WS Noble
Nucleic acids research 43 (W1), W39-W49, 2015
4482015
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ...
Nature genetics 41 (5), 553, 2009
3912009
Defining the RGG/RG motif
P Thandapani, TR O’Connor, TL Bailey, S Richard
Molecular cell 50 (5), 613-623, 2013
2652013
Discovering sequence motifs with arbitrary insertions and deletions
MC Frith, NFW Saunders, B Kobe, TL Bailey
PLoS computational biology 4 (5), e1000071, 2008
2622008
Meta-MEME: motif-based hidden Markov models of protein families
WN Grundy, TL Bailey, CP Elkan, ME Baker
Bioinformatics 13 (4), 397-406, 1997
2501997
Methods and statistics for combining motif match scores
TL Bailey, M Gribskov
Journal of Computational Biology 5 (2), 211-221, 1998
2471998
Inferring direct DNA binding from ChIP-seq
TL Bailey, P Machanick
Nucleic acids research 40 (17), e128-e128, 2012
2392012
Practical guidelines for the comprehensive analysis of ChIP-seq data
T Bailey, P Krajewski, I Ladunga, C Lefebvre, Q Li, T Liu, P Madrigal, ...
PLoS computational biology 9 (11), e1003326, 2013
2242013
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