Thomas J. Sharpton
Thomas J. Sharpton
Associate Professor, Oregon State University
Verified email at - Homepage
Cited by
Cited by
Structure, function and diversity of the healthy human microbiome
nature 486 (7402), 207-214, 2012
A framework for human microbiome research
nature 486 (7402), 215-221, 2012
An introduction to the analysis of shotgun metagenomic data
TJ Sharpton
Frontiers in plant science 5, 209, 2014
Metacoder: An R package for visualization and manipulation of community taxonomic diversity data
ZSL Foster, TJ Sharpton, NJ Grünwald
PLoS computational biology 13 (2), e1005404, 2017
A taxonomic signature of obesity in the microbiome? Getting to the guts of the matter
MM Finucane, TJ Sharpton, TJ Laurent, KS Pollard
PloS one 9 (1), e84689, 2014
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
TJ Sharpton, JE Stajich, SD Rounsley, MJ Gardner, JR Wortman, ...
Genome research 19 (10), 1722-1731, 2009
Preserving accuracy in GenBank
MI Bidartondo, TD Bruns, M Blackwell, I Edwards, AFS Taylor, ...
American Association for the Advancement of Science, 2008
Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control
DE Neafsey, BM Barker, TJ Sharpton, JE Stajich, DJ Park, E Whiston, ...
Genome research 20 (7), 938-946, 2010
Global marine bacterial diversity peaks at high latitudes in winter
J Ladau, TJ Sharpton, MM Finucane, G Jospin, SW Kembel, J O'dwyer, ...
The ISME journal 7 (9), 1669-1677, 2013
Profile hidden Markov models for the detection of viruses within metagenomic sequence data
P Skewes-Cox, TJ Sharpton, KS Pollard, JL DeRisi
PloS one 9 (8), e105067, 2014
The influence of ethnicity and geography on human gut microbiome composition
CA Gaulke, TJ Sharpton
Nature medicine 24 (10), 1495-1496, 2018
Triclosan exposure is associated with rapid restructuring of the microbiome in adult zebrafish
CA Gaulke, CL Barton, S Proffitt, RL Tanguay, TJ Sharpton
PloS one 11 (5), e0154632, 2016
Novel bacterial taxa in the human microbiome
KM Wylie, RM Truty, TJ Sharpton, KA Mihindukulasuriya, Y Zhou, H Gao, ...
PloS one 7 (6), e35294, 2012
PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data
TJ Sharpton, SJ Riesenfeld, SW Kembel, J Ladau, JP O'Dwyer, JL Green, ...
PLoS computational biology 7 (1), e1001061, 2011
Mechanisms of intron gain and loss in Cryptococcus
TJ Sharpton, DE Neafsey, JE Galagan, JW Taylor
Genome biology 9 (1), 1-10, 2008
Comparative Transcriptomics of the Saprobic and Parasitic Growth Phases in Coccidioides spp
E Whiston, H Zhang Wise, TJ Sharpton, G Jui, GT Cole, JW Taylor
PloS one 7 (7), e41034, 2012
A metagenomic meta-analysis reveals functional signatures of health and disease in the human gut microbiome
CR Armour, S Nayfach, KS Pollard, TJ Sharpton
MSystems 4 (4), e00332-18, 2019
Aging and serum MCP-1 are associated with gut microbiome composition in a murine model
MN Conley, CP Wong, KM Duyck, N Hord, E Ho, TJ Sharpton
PeerJ 4, e1854, 2016
Microbiome multi-omics network analysis: statistical considerations, limitations, and opportunities
D Jiang, CR Armour, C Hu, M Mei, C Tian, TJ Sharpton, Y Jiang
Frontiers in genetics 10, 995, 2019
Automated and accurate estimation of gene family abundance from shotgun metagenomes
S Nayfach, PH Bradley, SK Wyman, TJ Laurent, A Williams, JA Eisen, ...
PLoS computational biology 11 (11), e1004573, 2015
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