Thomas J. Sharpton
Thomas J. Sharpton
Associate Professor, Oregon State University
Verified email at - Homepage
Cited by
Cited by
Structure, function and diversity of the healthy human microbiome
C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ...
nature 486 (7402), 207, 2012
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
nature 486 (7402), 215, 2012
An introduction to the analysis of shotgun metagenomic data
TJ Sharpton
Frontiers in plant science 5, 209, 2014
A taxonomic signature of obesity in the microbiome? Getting to the guts of the matter
MM Finucane, TJ Sharpton, TJ Laurent, KS Pollard
PloS one 9 (1), e84689, 2014
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
TJ Sharpton, JE Stajich, SD Rounsley, MJ Gardner, JR Wortman, ...
Genome research 19 (10), 1722-1731, 2009
Preserving accuracy in GenBank
TD Bruns, M Blackwell, I Edwards, AFS Taylor, T Horton, N Zhang, ...
Science 319 (5870), 2008
Metacoder: An R package for visualization and manipulation of community taxonomic diversity data
ZSL Foster, TJ Sharpton, NJ Grünwald
PLoS computational biology 13 (2), e1005404, 2017
Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control
DE Neafsey, BM Barker, TJ Sharpton, JE Stajich, DJ Park, E Whiston, ...
Genome research 20 (7), 938-946, 2010
Global marine bacterial diversity peaks at high latitudes in winter
J Ladau, TJ Sharpton, MM Finucane, G Jospin, SW Kembel, J O'dwyer, ...
The ISME journal 7 (9), 1669-1677, 2013
Profile hidden Markov models for the detection of viruses within metagenomic sequence data
P Skewes-Cox, TJ Sharpton, KS Pollard, JL DeRisi
PloS one 9 (8), e105067, 2014
Novel bacterial taxa in the human microbiome
KM Wylie, RM Truty, TJ Sharpton, KA Mihindukulasuriya, Y Zhou, H Gao, ...
PloS one 7 (6), e35294, 2012
PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data
TJ Sharpton, SJ Riesenfeld, SW Kembel, J Ladau, JP O'Dwyer, JL Green, ...
PLoS Comput Biol 7 (1), e1001061, 2011
Triclosan exposure is associated with rapid restructuring of the microbiome in adult zebrafish
CA Gaulke, CL Barton, S Proffitt, RL Tanguay, TJ Sharpton
PloS one 11 (5), e0154632, 2016
Mechanisms of intron gain and loss in Cryptococcus
TJ Sharpton, DE Neafsey, JE Galagan, JW Taylor
Genome biology 9 (1), 1-10, 2008
The influence of ethnicity and geography on human gut microbiome composition
CA Gaulke, TJ Sharpton
Nature medicine 24 (10), 1495-1496, 2018
Aging and serum MCP-1 are associated with gut microbiome composition in a murine model
MN Conley, CP Wong, KM Duyck, N Hord, E Ho, TJ Sharpton
PeerJ 4, e1854, 2016
Comparative transcriptomics of the saprobic and parasitic growth phases in Coccidioides spp
E Whiston, HZ Wise, TJ Sharpton, G Jui, GT Cole, JW Taylor
PloS one 7 (7), e41034, 2012
Automated and accurate estimation of gene family abundance from shotgun metagenomes
S Nayfach, PH Bradley, SK Wyman, TJ Laurent, A Williams, JA Eisen, ...
PLoS Comput Biol 11 (11), e1004573, 2015
A metagenomic meta-analysis reveals functional signatures of health and disease in the human gut microbiome
CR Armour, S Nayfach, KS Pollard, TJ Sharpton
MSystems 4 (4), 2019
Backbones of evolutionary history test biodiversity theory for microbes
JP O’Dwyer, SW Kembel, TJ Sharpton
Proceedings of the National Academy of Sciences 112 (27), 8356-8361, 2015
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