Fatemeh Zare-Mirakabad
Fatemeh Zare-Mirakabad
Assistant Professor of Computer Science , Amirkabir University of Technology
Verified email at aut.ac.ir - Homepage
TitleCited byYear
Genetic algorithm for dyad pattern finding in DNA sequences
F Zare-Mirakabad, H Ahrabian, M Sadeghi, S Hashemifar, ...
Genes & genetic systems 84 (1), 81-93, 2009
252009
WCOACH: Protein complex prediction in weighted PPI networks
M Kouhsar, F Zare-Mirakabad, Y Jamali
Genes & genetic systems, 15-00032, 2016
192016
New scoring schema for finding motifs in DNA Sequences
F Zare-Mirakabad, H Ahrabian, M Sadeghi, A Nowzari-Dalini, B Goliaei
BMC bioinformatics 10 (1), 93, 2009
172009
Transcription factor binding sites prediction based on modified nucleosomes
M Talebzadeh, F Zare-Mirakabad
PloS one 9 (2), e89226, 2014
112014
RNA-RNA interaction prediction using genetic algorithm
S Montaseri, F Zare-Mirakabad, N Moghadam-Charkari
Algorithms for Molecular Biology 9 (1), 17, 2014
72014
PSOMF: An algorithm for pattern discovery using PSO
F Zare-Mirakabad, H Ahrabian, M Sadeghi, J Mohammadzadeh, ...
Proceedings of the Third IAPR International Conferences on Pattern …, 2008
62008
RNA secondary structure prediction based on SHAPE data in helix regions
M Lotfi, F Zare-Mirakabad, S Montaseri
Journal of theoretical biology 380, 178-182, 2015
52015
Evolutionary algorithm for RNA secondary structure prediction based on simulated SHAPE data
S Montaseri, M Ganjtabesh, F Zare-Mirakabad
PloS one 11 (11), e0166965, 2016
42016
Inverse RNA folding solution based on multi-objective genetic algorithm and Gibbs sampling method
M Ganjtabesh, F Zare-Mirakabad, A Nowzari-Dalini
EXCLI journal 12, 546, 2013
42013
RNAComp: A new method for RNA secondary structure alignment
F Zare-Mirakabad, M Sadeghi, H Ahrabian, A Nowzari-Dalini
Match 61 (3), 789, 2009
42009
A heuristic approach to RNA–RNA interaction prediction
S Montaseri, N Moghadam-Charkari, F Zare-Mirakabad
Journal of theoretical biology 300, 206-211, 2012
32012
Evaluating the quality of SHAPE data simulated by k-mers for RNA structure prediction
S Montaseri, F Zare-Mirakabad, M Ganjtabesh
Journal of bioinformatics and computational biology 15 (06), 1750023, 2017
22017
Evaluating the accuracy of protein design using native secondary sub-structures
M Movahedi, F Zare-Mirakabad, SS Arab
BMC bioinformatics 17 (1), 353, 2016
22016
S-FLN: A sequence-based hierarchical approach for functional linkage network construction
A Jalilvand, B Akbari, FZ Mirakabad
Journal of theoretical biology 437, 149-162, 2018
12018
A Constant Time Algorithm for DNA Add
H Ahrabian, A Nowzari-Dalini, F Zare-Mirakabad
International Journal of Foundations of Computer Science 20 (03), 549-558, 2009
12009
Disease gene prioritization using network topological analysis from a sequence based human functional linkage network
A Jalilvand, B Akbari, FZ Mirakabad, F Ghaderi
arXiv preprint arXiv:1904.06973, 2019
2019
Assessing the impact of exact reads on reducing the error rate of read mapping
F Salari, F Zare-Mirakabad, M Sadeghi, H Rokni-Zadeh
BMC bioinformatics 19 (1), 406, 2018
2018
The effect of stochasticity on repair of DNA double strand breaks throughout non-homologous end joining pathway
FS Mohseni-Salehi, F Zare-Mirakabad, S Ghafouri-Fard, M Sadeghi
Mathematical medicine and biology: a journal of the IMA 35 (4), 517-539, 2017
2017
RNA design using simulated SHAPE data
M Lotfi, F Zare-Mirakabad, S Montaseri
Genes & genetic systems, 16-00067, 2017
2017
Motif Finding in upstream regulatory regions of co-expressed genes using Cuckoo optimization Algorithm and Simulated Annealing
مهری ملالو, مهری, زارع میرک آباد
TABRIZ JOURNAL OF ELECTRICAL ENGINEERING 46 (3), 333-344, 2016
2016
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