| Functional landscape of SARS-CoV-2 cellular restriction L Martin-Sancho, MK Lewinski, L Pache, CA Stoneham, X Yin, ME Becker, ... Molecular cell 81 (12), 2656-2668. e8, 2021 | 170 | 2021 |
| A protein interaction landscape of breast cancer M Kim, J Park, M Bouhaddou, K Kim, A Rojc, M Modak, M Soucheray, ... Science 374 (6563), eabf3066, 2021 | 78 | 2021 |
| A multi-scale map of cell structure fusing protein images and interactions Y Qin, EL Huttlin, CF Winsnes, ML Gosztyla, L Wacheul, MR Kelly, ... Nature 600 (7889), 536-542, 2021 | 56* | 2021 |
| A protein network map of head and neck cancer reveals PIK3CA mutant drug sensitivity DL Swaney, DJ Ramms, Z Wang, J Park, Y Goto, M Soucheray, N Bhola, ... Science 374 (6563), eabf2911, 2021 | 39 | 2021 |
| Multiscale community detection in Cytoscape A Singhal, S Cao, C Churas, D Pratt, S Fortunato, F Zheng, T Ideker PLoS computational biology 16 (10), e1008239, 2020 | 37 | 2020 |
| Tertiary structural propensities reveal fundamental sequence/structure relationships F Zheng, J Zhang, G Grigoryan Structure 23 (5), 961-971, 2015 | 35 | 2015 |
| Design and designability of protein-based assemblies J Zhang, F Zheng, G Grigoryan Current opinion in structural biology 27, 79-86, 2014 | 35 | 2014 |
| Interpretation of cancer mutations using a multiscale map of protein systems F Zheng, MR Kelly, DJ Ramms, ML Heintschel, K Tao, B Tutuncuoglu, ... Science 374 (6563), eabf3067, 2021 | 33 | 2021 |
| HiDeF: identifying persistent structures in multiscale ‘omics data F Zheng, S Zhang, C Churas, D Pratt, I Bahar, T Ideker Genome Biology 22 (1), 1-15, 2021 | 29 | 2021 |
| Computational design of selective peptides to discriminate between similar PDZ domains in an oncogenic pathway F Zheng, H Jewell, J Fitzpatrick, J Zhang, DF Mierke, G Grigoryan Journal of molecular biology 427 (2), 491-510, 2015 | 26 | 2015 |
| Sequence statistics of tertiary structural motifs reflect protein stability F Zheng, G Grigoryan PloS one 12 (5), e0178272, 2017 | 23 | 2017 |
| DDOT: A swiss army knife for investigating data-driven biological ontologies MK Yu, J Ma, K Ono, F Zheng, SH Fong, A Gary, J Chen, B Demchak, ... Cell systems 8 (3), 267-273. e3, 2019 | 20 | 2019 |
| Annotating gene sets by mining large literature collections with protein networks S Wang, J Ma, MK Yu, F Zheng, EW Huang, J Han, J Peng, T Ideker PACIFIC SYMPOSIUM ON BIOCOMPUTING 2018: Proceedings of the Pacific Symposium …, 2018 | 17 | 2018 |
| A multi-scale map of protein assemblies in the DNA damage response A Kratz, M Kim, MR Kelly, F Zheng, CA Koczor, J Li, K Ono, Y Qin, ... Cell Systems 14 (6), 447-463. e8, 2023 | 5 | 2023 |
| Design of Specific Peptide–Protein Recognition F Zheng, G Grigoryan Methods of molecular biology, 249-263, 2016 | 3 | 2016 |
| Simplifying the Design of Protein-Peptide Interaction Specificity with Sequence-Based Representations of Atomistic Models F Zheng, G Grigoryan Modeling Peptide-Protein Interactions: Methods and Protocols, 189-200, 2017 | 2 | 2017 |
| Desmosome mutations impact the tumor microenvironment to promote melanoma proliferation M Baron, M Tagore, P Wall, F Zheng, D Barkley, I Yanai, J Yang, M Kiuru, ... bioRxiv, 2023.09. 19.558457, 2023 | | 2023 |
Trey IdekerUniversity of California San DiegoVerified email at ucsd.edu
