Xiaohui Xie
Xiaohui Xie
Professor of Computer Science, University of California, Irvine
Verified email at uci.edu - Homepage
TitleCited byYear
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
BE Bernstein, TS Mikkelsen, X Xie, M Kamal, DJ Huebert, J Cuff, B Fry, ...
Cell 125 (2), 315-326, 2006
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
TS Mikkelsen, M Ku, DB Jaffe, B Issac, E Lieberman, G Giannoukos, ...
Nature 448 (7153), 553, 2007
Genome sequence, comparative analysis and haplotype structure of the domestic dog
K Lindblad-Toh, CM Wade, TS Mikkelsen, EK Karlsson, DB Jaffe, ...
Nature 438 (7069), 803, 2005
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
X Xie, J Lu, EJ Kulbokas, TR Golub, V Mootha, K Lindblad-Toh, ...
Nature 434 (7031), 338, 2005
Genome-wide detection and characterization of positive selection in human populations
PC Sabeti, P Varilly, B Fry, J Lohmueller, E Hostetter, C Cotsapas, X Xie, ...
Nature 449 (7164), 913, 2007
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
LJ Ma, HC Van Der Does, KA Borkovich, JJ Coleman, MJ Daboussi, ...
Nature 464 (7287), 367, 2010
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains
M Ku, RP Koche, E Rheinbay, EM Mendenhall, M Endoh, TS Mikkelsen, ...
PLoS genetics 4 (10), e1000242, 2008
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476, 2011
Errα and Gabpa/b specify PGC-1α-dependent oxidative phosphorylation gene expression that is altered in diabetic muscle
VK Mootha, C Handschin, D Arlow, X Xie, JS Pierre, S Sihag, W Yang, ...
Proceedings of the National Academy of Sciences 101 (17), 6570-6575, 2004
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ...
Nature 447 (7141), 167, 2007
Distinguishing protein-coding and noncoding genes in the human genome
M Clamp, B Fry, M Kamal, X Xie, J Cuff, MF Lin, M Kellis, K Lindblad-Toh, ...
Proceedings of the National Academy of Sciences 104 (49), 19428-19433, 2007
A mammalian organelle map by protein correlation profiling
LJ Foster, CL de Hoog, Y Zhang, Y Zhang, X Xie, VK Mootha, M Mann
Cell 125 (1), 187-199, 2006
Systematic identification of human mitochondrial disease genes through integrative genomics
S Calvo, M Jain, X Xie, SA Sheth, B Chang, OA Goldberger, A Spinazzola, ...
Nature genetics 38 (5), 576, 2006
Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites
X Xie, TS Mikkelsen, A Gnirke, K Lindblad-Toh, M Kellis, ES Lander
Proceedings of the National Academy of Sciences 104 (17), 7145-7150, 2007
Co-occurrence feature learning for skeleton based action recognition using regularized deep LSTM networks
W Zhu, C Lan, J Xing, W Zeng, Y Li, L Shen, X Xie
Thirtieth AAAI Conference on Artificial Intelligence, 2016
DANN: a deep learning approach for annotating the pathogenicity of genetic variants
D Quang, Y Chen, X Xie
Bioinformatics 31 (5), 761-763, 2014
Comparative sequence analysis reveals an intricate network among REST, CREB and miRNA in mediating neuronal gene expression
J Wu, X Xie
Genome biology 7 (9), R85, 2006
Identifying novel constrained elements by exploiting biased substitution patterns
M Garber, M Guttman, M Clamp, MC Zody, N Friedman, X Xie
Bioinformatics 25 (12), i54-i62, 2009
DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences
D Quang, X Xie
Nucleic acids research 44 (11), e107-e107, 2016
Human genomes as email attachments
S Christley, Y Lu, C Li, X Xie
Bioinformatics 25 (2), 274-275, 2008
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