| A bivalent chromatin structure marks key developmental genes in embryonic stem cells BE Bernstein, TS Mikkelsen, X Xie, M Kamal, DJ Huebert, J Cuff, B Fry, ... Cell 125 (2), 315-326, 2006 | 5022 | 2006 |
| Genome-wide maps of chromatin state in pluripotent and lineage-committed cells TS Mikkelsen, M Ku, DB Jaffe, B Issac, E Lieberman, G Giannoukos, ... Nature 448 (7153), 553-560, 2007 | 4098 | 2007 |
| Genome sequence, comparative analysis and haplotype structure of the domestic dog K Lindblad-Toh, CM Wade, TS Mikkelsen, EK Karlsson, DB Jaffe, ... Nature 438 (7069), 803-819, 2005 | 2469 | 2005 |
| Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals X Xie, J Lu, EJ Kulbokas, TR Golub, V Mootha, K Lindblad-Toh, ... Nature 434 (7031), 338-345, 2005 | 2184 | 2005 |
| Genome-wide detection and characterization of positive selection in human populations PC Sabeti, P Varilly, B Fry, J Lohmueller, E Hostetter, C Cotsapas, X Xie, ... Nature 449 (7164), 913-918, 2007 | 1606 | 2007 |
| Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium LJ Ma, HC Van Der Does, KA Borkovich, JJ Coleman, MJ Daboussi, ... Nature 464 (7287), 367-373, 2010 | 1206 | 2010 |
| Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains M Ku, RP Koche, E Rheinbay, EM Mendenhall, M Endoh, TS Mikkelsen, ... PLoS Genet 4 (10), e1000242, 2008 | 973 | 2008 |
| A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011 | 959 | 2011 |
| Errα and Gabpa/b specify PGC-1α-dependent oxidative phosphorylation gene expression that is altered in diabetic muscle VK Mootha, C Handschin, D Arlow, X Xie, JS Pierre, S Sihag, W Yang, ... Proceedings of the National Academy of Sciences 101 (17), 6570-6575, 2004 | 693 | 2004 |
| Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ... Nature 447 (7141), 167-177, 2007 | 682 | 2007 |
| Distinguishing protein-coding and noncoding genes in the human genome M Clamp, B Fry, M Kamal, X Xie, J Cuff, MF Lin, M Kellis, K Lindblad-Toh, ... Proceedings of the National Academy of Sciences 104 (49), 19428-19433, 2007 | 660 | 2007 |
| A mammalian organelle map by protein correlation profiling LJ Foster, CL de Hoog, Y Zhang, Y Zhang, X Xie, VK Mootha, M Mann Cell 125 (1), 187-199, 2006 | 552 | 2006 |
| Co-occurrence feature learning for skeleton based action recognition using regularized deep LSTM networks W Zhu, C Lan, J Xing, W Zeng, Y Li, L Shen, X Xie arXiv preprint arXiv:1603.07772, 2016 | 480 | 2016 |
| DANN: a deep learning approach for annotating the pathogenicity of genetic variants D Quang, Y Chen, X Xie Bioinformatics 31 (5), 761-763, 2015 | 449 | 2015 |
| Systematic identification of human mitochondrial disease genes through integrative genomics S Calvo, M Jain, X Xie, SA Sheth, B Chang, OA Goldberger, A Spinazzola, ... Nature genetics 38 (5), 576-582, 2006 | 408 | 2006 |
| Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites X Xie, TS Mikkelsen, A Gnirke, K Lindblad-Toh, M Kellis, ES Lander Proceedings of the National Academy of Sciences 104 (17), 7145-7150, 2007 | 356 | 2007 |
| DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences D Quang, X Xie Nucleic acids research 44 (11), e107-e107, 2016 | 342 | 2016 |
| Identifying novel constrained elements by exploiting biased substitution patterns M Garber, M Guttman, M Clamp, MC Zody, N Friedman, X Xie Bioinformatics 25 (12), i54-i62, 2009 | 284 | 2009 |
| Comparative sequence analysis reveals an intricate network among REST, CREBand miRNA in mediating neuronal gene expression J Wu, X Xie Genome biology 7 (9), R85, 2006 | 279 | 2006 |
| Gene expression inference with deep learning Y Chen, Y Li, R Narayan, A Subramanian, X Xie Bioinformatics 32 (12), 1832-1839, 2016 | 248 | 2016 |
Tarjei S. MikkelsenArsenalBioVerified email at alum.mit.edu
