Pradipta Ray
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Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
Epigenomic analysis of multilineage differentiation of human embryonic stem cells
W Xie, MD Schultz, R Lister, Z Hou, N Rajagopal, P Ray, JW Whitaker, ...
Cell 153 (5), 1134-1148, 2013
Integrative analysis of haplotype-resolved epigenomes across human tissues
D Leung, I Jung, N Rajagopal, A Schmitt, S Selvaraj, AY Lee, CA Yen, ...
Nature 518 (7539), 350-354, 2015
Comparative transcriptome profiling of the human and mouse dorsal root ganglia: an RNA-seq-based resource for pain and sensory neuroscience research
P Ray, A Torck, L Quigley, A Wangzhou, M Neiman, C Rao, T Lam, ...
Pain 159 (7), 1325, 2018
Electrophysiological and transcriptomic correlates of neuropathic pain in human dorsal root ganglion neurons
RY North, Y Li, P Ray, LD Rhines, CE Tatsui, G Rao, CA Johansson, ...
Brain 142 (5), 1215-1226, 2019
Nociceptor translational profiling reveals the Ragulator-Rag GTPase complex as a critical generator of neuropathic pain
S Megat, PR Ray, JK Moy, TF Lou, P Barragán-Iglesias, Y Li, G Pradhan, ...
Journal of Neuroscience 39 (3), 393-411, 2019
Angiotensin II triggers peripheral macrophage-to-sensory neuron redox crosstalk to elicit pain
AJ Shepherd, BA Copits, AD Mickle, P Karlsson, S Kadunganattil, ...
Journal of Neuroscience 38 (32), 7032-7057, 2018
Part of speech tagging and local word grouping techniques for natural language parsing in Hindi
PR Ray, V Harish, S Sarkar, A Basu
Proceedings of the 1st International Conference on Natural Language …, 2003
Sigma 2 Receptor/Tmem97 Agonists Produce Long Lasting Antineuropathic Pain Effects in Mice
JJ Sahn, GL Mejia, PR Ray, SF Martin, TJ Price
ACS Chemical Neuroscience 8 (8), 1801-1811, 2017
ACE2 and SCARF expression in human dorsal root ganglion nociceptors: implications for SARS-CoV-2 virus neurological effects
S Shiers, PR Ray, A Wangzhou, I Sankaranarayanan, CE Tatsui, ...
Pain 161 (11), 2494-2501, 2020
Group II mGluRs suppress hyperexcitability in mouse and human nociceptors
S Davidson, JP Golden, BA Copits, PR Ray, SK Vogt, MV Valtcheva, ...
Pain 157 (9), 2081, 2016
Differences between dorsal root and trigeminal ganglion nociceptors in mice revealed by translational profiling
S Megat, PR Ray, D Tavares-Ferreira, JK Moy, I Sankaranarayanan, ...
Journal of Neuroscience 39 (35), 6829-6847, 2019
Pharmacological target-focused transcriptomic analysis of native vs cultured human and mouse dorsal root ganglia
A Wangzhou, LA McIlvried, C Paige, P Barragan-Iglesias, S Shiers, ...
Pain 161 (7), 1497-1517, 2020
Distinct and predictive histone lysine acetylation patterns at promoters, enhancers, and gene bodies
N Rajagopal, J Ernst, P Ray, J Wu, M Zhang, M Kellis, B Ren
G3: Genes| Genomes| Genetics 4 (11), 2051-2063, 2014
Baycis: a bayesian hierarchical hmm for cis-regulatory module decoding in metazoan genomes
T Lin, P Ray, GK Sandve, S Uguroglu, EP Xing
Proceedings of the 12th annual international conference on Research in …, 2008
A pharmacological interactome between COVID-19 patient samples and human sensory neurons reveals potential drivers of neurogenic pulmonary dysfunction
PR Ray, A Wangzhou, N Ghneim, MS Yousuf, C Paige, ...
Brain, behavior, and immunity 89, 559-568, 2020
CSMET: comparative genomic motif detection via multi-resolution phylogenetic shadowing
P Ray, S Shringarpure, M Kolar, EP Xing
PLoS computational biology 4 (6), e1000090, 2008
Transcriptome analysis of the human tibial nerve identifies sexually dimorphic expression of genes involved in pain, inflammation, and neuro-immunity
PR Ray, J Khan, A Wangzhou, D Tavares-Ferreira, AN Akopian, G Dussor, ...
Frontiers in molecular neuroscience 12, 37, 2019
DISCOVER: a feature-based discriminative method for motif search in complex genomes
W Fu, P Ray, EP Xing
Bioinformatics 25 (12), i321-i329, 2009
DIRECTION: a machine learning framework for predicting and characterizing DNA methylation and hydroxymethylation in mammalian genomes
M Pavlovic, P Ray, K Pavlovic, A Kotamarti, M Chen, MQ Zhang
Bioinformatics 33 (19), 2986-2994, 2017
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