Delphine Ropers
Delphine Ropers
Verified email at inria.fr
Title
Cited by
Cited by
Year
Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli
G Batt, D Ropers, H De Jong, J Geiselmann, R Mateescu, M Page, ...
Bioinformatics 21 (suppl_1), i19-i28, 2005
2312005
Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli
G Batt, D Ropers, H De Jong, J Geiselmann, R Mateescu, M Page, ...
Bioinformatics 21 (suppl_1), i19-i28, 2005
2312005
Qualitative simulation of the carbon starvation response in Escherichia coli
D Ropers, H De Jong, M Page, D Schneider, J Geiselmann
Biosystems 84 (2), 124-152, 2006
1662006
Shared control of gene expression in bacteria by transcription factors and global physiology of the cell
S Berthoumieux, H De Jong, G Baptist, C Pinel, C Ranquet, D Ropers, ...
Molecular systems biology 9 (1), 634, 2013
1422013
Temporal logic patterns for querying dynamic models of cellular interaction networks
PT Monteiro, D Ropers, R Mateescu, AT Freitas, H De Jong
Bioinformatics 24 (16), i227-i233, 2008
1032008
Conserved stem–loop structures in the HIV-1 RNA region containing the A3 3′ splice site and its cis-regulatory element: possible involvement in RNA splicing
S Jacquenet, D Ropers, PS Bilodeau, L Damier, A Mougin, CM Stoltzfus, ...
Nucleic acids research 29 (2), 464-478, 2001
912001
Differential effects of the SR proteins 9G8, SC35, ASF/SF2, and SRp40 on the utilization of the A1 to A5 splicing sites of HIV-1 RNA
D Ropers, L Ayadi, R Gattoni, S Jacquenet, L Damier, C Branlant, ...
Journal of Biological Chemistry 279 (29), 29963-29973, 2004
822004
Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria
H De Jong, C Ranquet, D Ropers, C Pinel, J Geiselmann
BMC systems biology 4 (1), 1-17, 2010
812010
Understanding carbon catabolite repression in Escherichia coli using quantitative models
A Kremling, J Geiselmann, D Ropers, H de Jong
Trends in microbiology 23 (2), 99-109, 2015
642015
The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes
V Baldazzi, D Ropers, Y Markowicz, D Kahn, J Geiselmann, H De Jong
PLoS Comput Biol 6 (6), e1000812, 2010
612010
Qualitative Analysis and Verification of Hybrid Models of Genetic Regulatory Networks: Nutritional Stress Response in Escherichia coli
G Batt, D Ropers, H De Jong, J Geiselmann, M Page, D Schneider
International Workshop on Hybrid Systems: Computation and Control, 134-150, 2005
612005
A declarative constraint-based method for analyzing discrete genetic regulatory networks
F Corblin, S Tripodi, E Fanchon, D Ropers, L Trilling
Biosystems 98 (2), 91-104, 2009
592009
Biochemical and NMR study on the competition between proteins SC35, SRp40, and heterogeneous nuclear ribonucleoprotein A1 at the HIV-1 Tat exon 2 splicing site
H Hallay, N Locker, L Ayadi, D Ropers, E Guittet, C Branlant
Journal of Biological Chemistry 281 (48), 37159-37174, 2006
572006
A synthetic growth switch based on controlled expression of RNA polymerase
J Izard, CDC Gomez Balderas, D Ropers, S Lacour, X Song, Y Yang, ...
Molecular systems biology 11 (11), 840, 2015
512015
Analysis and verification of qualitative models of genetic regulatory networks: A model-checking approach
G Batt, D Ropers, H De Jong, J Geiselmann, R Mateescu, M Page, ...
IJCAI, 370-375, 2005
372005
Model reduction using piecewise-linear approximations preserves dynamic properties of the carbon starvation response in Escherichia coli
D Ropers, V Baldazzi, H de Jong
IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (1), 166-181, 2009
362009
Strategies for dealing with incomplete information in the modeling of molecular interaction networks
H de Jong, D Ropers
Briefings in bioinformatics 7 (4), 354-363, 2006
342006
Qualitative approaches to the analysis of genetic regulatory networks
H de Jong, D Ropers
System Modeling in Cellular Biology: From Concepts to Nuts and Bolts, 125-147, 2006
322006
The post‐transcriptional regulatory system CSR controls the balance of metabolic pools in upper glycolysis of Escherichia coli
M Morin, D Ropers, F Letisse, S Laguerre, JC Portais, ...
Molecular Microbiology 100 (4), 686-700, 2016
312016
Genetic network analyzer: a tool for the qualitative modeling and simulation of bacterial regulatory networks
G Batt, B Besson, PE Ciron, H de Jong, E Dumas, J Geiselmann, R Monte, ...
Bacterial Molecular Networks, 439-462, 2012
302012
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Articles 1–20