Se Jin Song

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Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerified email at ucsd.edu
Jessica L. MetcalfAssociate Professor, Colorado State University, Fort Collins, COVerified email at colostate.edu
Antonio GonzálezProgrammer Analyst, UC San DiegoVerified email at ucsd.edu
Yoshiki Vázquez-BaezaBiomeSenseVerified email at biomesense.com
Daniel McDonaldAmerican Gut, Knight Lab, Department of Pediatrics, UCSDVerified email at ucsd.edu
Pieter C DorresteinUCSDVerified email at ucsd.edu
Nicholas BokulichETH ZürichVerified email at ethz.ch
Jose C. ClementeAssociate Professor, Icahn School of Medicine at Mount SinaiVerified email at mssm.edu
Maria Gloria Dominguez-BelloProfessor, Director, NJ Institute for Food, Nutrition and Health, Rutgers UniversityVerified email at rutgers.edu
Zhenjiang Zech XuVerified email at ucsd.edu
Gregory HumphreyUniversity of California, San Diego Knight LabVerified email at ucsd.edu
Qiyun ZhuArizona State UniversityVerified email at asu.edu
Jose A Navas-MolinaUniversity of California, San DiegoVerified email at eng.ucsd.edu
Embriette HydeFreelance Science Writer and Research ConsultantVerified email at drhydenotjekyll.com
Christian L LauberNationwide Children's HospitalVerified email at nationwidechildrens.org
Sandrine Javorschi-Miller-MontgomeryMicronomaVerified email at micronoma.com
Katherine R AmatoAssistant Professor, Northwestern UniversityVerified email at northwestern.edu
Robert A QuinnAssistant Professor, Department of Biochemistry and Molecular Biology, Michigan State University,Verified email at msu.edu
Stephen WandroMicronomaVerified email at micronoma.com
Martin BlaserProfessor of Medicine and Microbiology, Rutgers UniversityVerified email at cabm.rutgers.edu

Se Jin Song

University of California San Diego

Verified email at ucsd.edu

microbial ecology symbiosis evolution


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	11463	2019
The treatment-naive microbiome in new-onset Crohn’s disease D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ... Cell host & microbe 15 (3), 382-392, 2014	3047	2014
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017	2039	2017
Cohabiting family members share microbiota with one another and with their dogs SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ... elife 2, e00458, 2013	1096	2013
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer MG Dominguez-Bello, KM De Jesus-Laboy, N Shen, LM Cox, A Amir, ... Nature medicine 22 (3), 250-253, 2016	1001	2016
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018	890	2018
The microbiome of uncontacted Amerindians JC Clemente, EC Pehrsson, MJ Blaser, K Sandhu, Z Gao, B Wang, ... Science advances 1 (3), e1500183, 2015	860	2015
Microbiome analyses of blood and tissues suggest cancer diagnostic approach GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ... Nature 579 (7800), 567-574, 2020	676	2020
Advancing our understanding of the human microbiome using QIIME JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ... Methods in enzymology 531, 371-444, 2013	617	2013
American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018	605	2018
Microbial community assembly and metabolic function during mammalian corpse decomposition JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren, ER Hyde, SJ Song, ... Science 351 (6269), 158-162, 2016	468	2016
Preservation methods differ in fecal microbiome stability, affecting suitability for field studies SJ Song, A Amir, JL Metcalf, KR Amato, ZZ Xu, G Humphrey, R Knight MSystems 1 (3), e00021-16, 2016	352	2016
The human microbiome in evolution ER Davenport, JG Sanders, SJ Song, KR Amato, AG Clark, R Knight BMC biology 15 (1), 1-12, 2017	345	2017
The effects of captivity on the mammalian gut microbiome VJ McKenzie, SJ Song, F Delsuc, TL Prest, AM Oliverio, TM Korpita, ... Integrative and comparative biology 57 (4), 690-704, 2017	332	2017
Convergence of gut microbiomes in myrmecophagous mammals F Delsuc, JL Metcalf, L Wegener Parfrey, SJ Song, A González, R Knight Molecular ecology 23 (6), 1301-1317, 2014	310	2014
From superspreaders to disease hotspots: linking transmission across hosts and space SH Paull, S Song, KM McClure, LC Sackett, AM Kilpatrick, PTJ Johnson Frontiers in Ecology and the Environment 10 (2), 75-82, 2012	299	2012
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes KR Amato, J G. Sanders, SJ Song, M Nute, JL Metcalf, LR Thompson, ... The ISME journal 13 (3), 576-587, 2019	240	2019
The bee microbiome: impact on bee health and model for evolution and ecology of host-microbe interactions P Engel, WK Kwong, Q McFrederick, KE Anderson, SM Barribeau, ... MBio 7 (2), 10.1128/mbio. 02164-15, 2016	231	2016
Learning representations of microbe–metabolite interactions JT Morton, AA Aksenov, LF Nothias, JR Foulds, RA Quinn, MH Badri, ... Nature methods 16 (12), 1306-1314, 2019	214	2019
Balance trees reveal microbial niche differentiation JT Morton, J Sanders, RA Quinn, D McDonald, A Gonzalez, ... MSystems 2 (1), e00162-16, 2017	213	2017

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