Gary Bader

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Ruth IsserlinDonnelly Centre, University of TorontoVerified email at utoronto.ca
Christopher HogueIndependentVerified email at blueprint.org
Charles BooneProfessor, Donnelly Centre, University of TorontoVerified email at utoronto.ca
Quaid MorrisComputational and Systems Biology Program, Memorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Jüri ReimandAssociate professor, Ontario Institute for Cancer Research, University of TorontoVerified email at utoronto.ca
Chris SanderDana-Farber Cancer Institute, Harvard Medical School, Broad Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Brenda AndrewsDirector, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Daniele MericoDeep Genomics Inc.Verified email at deepgenomics.com
Mike TyersInstitute for Research in Immunology and Cancer, University of MontrealVerified email at umontreal.ca
John H MorrisUCSFVerified email at cgl.ucsf.edu
Emek DemirOHSUVerified email at ohsu.edu
Alexander R PicoGladstone InstitutesVerified email at gladstone.ucsf.edu
Igor RodchenkovUniversity of TorontoVerified email at utoronto.ca
Philip M. KimProfessor, University of TorontoVerified email at kimlab.org
Jeff LiuUniversity Health NetworkVerified email at utoronto.ca
david gfellerUniversity of LausanneVerified email at unil.ch
Özgün BaburAssistant Professor at University of Massachusetts BostonVerified email at umb.edu
Ethan CeramiDirector, Knowledge Systems Group, Dana-Farber Cancer InstituteVerified email at jimmy.harvard.edu
Trey IdekerUniversity of California San DiegoVerified email at ucsd.edu
Abel Gonzalez-PerezInstitut de Recerca Biomedica BarcelonaVerified email at irbbarcelona.org

Gary Bader

Professor of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto

Verified email at utoronto.ca - Homepage

Computational Biology Network and Pathway Analysis Bioinformatics


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Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry Y Ho, A Gruhler, A Heilbut, GD Bader, L Moore, SL Adams, A Millar, ... Nature 415 (6868), 180-183, 2002	4382	2002
An automated method for finding molecular complexes in large protein interaction networks GD Bader, CWV Hogue BMC bioinformatics 4 (1), 1-27, 2003	4175	2003
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function D Warde-Farley, SL Donaldson, O Comes, K Zuberi, R Badrawi, P Chao, ... Nucleic acids research 38 (suppl_2), W214-W220, 2010	2538	2010
Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007	2362	2007
Systematic genetic analysis with ordered arrays of yeast deletion mutants AHY Tong, M Evangelista, AB Parsons, H Xu, GD Bader, N Pagé, ... Science 294 (5550), 2364-2368, 2001	2359	2001
Global mapping of the yeast genetic interaction network AHY Tong, G Lesage, GD Bader, H Ding, H Xu, X Xin, J Young, GF Berriz, ... science 303 (5659), 808-813, 2004	2358	2004
The genetic landscape of a cell M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ... science 327 (5964), 425-431, 2010	2231	2010
Functional impact of global rare copy number variation in autism spectrum disorders D Pinto, AT Pagnamenta, L Klei, R Anney, D Merico, R Regan, J Conroy, ... Nature 466 (7304), 368-372, 2010	2015	2010
A draft map of the human proteome MS Kim, SM Pinto, D Getnet, RS Nirujogi, SS Manda, R Chaerkady, ... Nature 509 (7502), 575-581, 2014	1931	2014
International network of cancer genome projects International Cancer Genome Consortium Nature 464 (7291), 993, 2010	1833	2010
BIND: the biomolecular interaction network database GD Bader, D Betel, CWV Hogue Nucleic acids research 31 (1), 248-250, 2003	1497	2003
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation D Merico, R Isserlin, O Stueker, A Emili, GD Bader PloS one 5 (11), e13984, 2010	1485	2010
A travel guide to Cytoscape plugins R Saito, ME Smoot, K Ono, J Ruscheinski, PL Wang, S Lotia, AR Pico, ... Nature methods 9 (11), 1069-1076, 2012	1192	2012
Pathway Commons, a web resource for biological pathway data EG Cerami, BE Gross, E Demir, I Rodchenkov, Ö Babur, N Anwar, ... Nucleic acids research 39 (suppl_1), D685-D690, 2010	1075	2010
Bioinformatics AD Baxevanis, GD Bader, DS Wishart John Wiley & Sons, 2020	998	2020
A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules AHY Tong, B Drees, G Nardelli, GD Bader, B Brannetti, L Castagnoli, ... Science 295 (5553), 321-324, 2002	872	2002
Association analysis identifies 65 new breast cancer risk loci K Michailidou, S Lindström, J Dennis, J Beesley, S Hui, S Kar, A Lemaçon, ... Nature 551 (7678), 92-94, 2017	784	2017
BIND—the biomolecular interaction network database GD Bader, I Donaldson, C Wolting, BFF Ouellette, T Pawson, CWV Hogue Nucleic acids research 29 (1), 242-245, 2001	760	2001
Subgroup-specific structural variation across 1,000 medulloblastoma genomes PA Northcott, DJH Shih, J Peacock, L Garzia, AS Morrissy, T Zichner, ... Nature 488 (7409), 49-56, 2012	743	2012
The HUPO PSI's molecular interaction format—a community standard for the representation of protein interaction data H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, ... Nature biotechnology 22 (2), 177-183, 2004	715	2004

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