Ben Langmead
Ben Langmead
Associate Professor of Computer Science, Johns Hopkins University
Verified email at cs.jhu.edu - Homepage
TitleCited byYear
Fast gapped-read alignment with Bowtie 2
B Langmead, SL Salzberg
Nature methods 9 (4), 357, 2012
172902012
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
B Langmead, C Trapnell, M Pop, SL Salzberg
Genome biology 10 (3), R25, 2009
154292009
HISAT: a fast spliced aligner with low memory requirements
D Kim, B Langmead, SL Salzberg
Nature methods 12 (4), 357, 2015
31732015
Tackling the widespread and critical impact of batch effects in high-throughput data
JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ...
Nature Reviews Genetics 11 (10), 733, 2010
11932010
Increased methylation variation in epigenetic domains across cancer types
KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ...
Nature genetics 43 (8), 768, 2011
9172011
Aligning short sequencing reads with Bowtie
B Langmead
Current protocols in bioinformatics 32 (1), 11.7. 1-11.7. 14, 2010
6832010
Searching for SNPs with cloud computing
B Langmead, MC Schatz, J Lin, M Pop, SL Salzberg
Genome biology 10 (11), R134, 2009
5512009
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
KD Hansen, B Langmead, RA Irizarry
Genome biology 13 (10), R83, 2012
3962012
Cloud-scale RNA-sequencing differential expression analysis with Myrna
B Langmead, KD Hansen, JT Leek
Genome biology 11 (8), R83, 2010
3572010
Cloud computing and the DNA data race
MC Schatz, B Langmead, SL Salzberg
Nature biotechnology 28 (7), 691, 2010
3342010
Reversible switching between epigenetic states in honeybee behavioral subcastes
BR Herb, F Wolschin, KD Hansen, MJ Aryee, B Langmead, R Irizarry, ...
Nature neuroscience 15 (10), 1371, 2012
2372012
Ballgown bridges the gap between transcriptome assembly and expression analysis
AC Frazee, G Pertea, AE Jaffe, B Langmead, SL Salzberg, JT Leek
Nature biotechnology 33 (3), 243, 2015
200*2015
ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets
AC Frazee, B Langmead, JT Leek
BMC bioinformatics 12 (1), 449, 2011
1602011
Lighter: fast and memory-efficient sequencing error correction without counting
L Song, L Florea, B Langmead
Genome biology 15 (11), 509, 2014
1442014
Reproducible RNA-seq analysis using recount2
L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ...
Nature biotechnology 35 (4), 319, 2017
1192017
Polyester: simulating RNA-seq datasets with differential transcript expression
AC Frazee, AE Jaffe, B Langmead, JT Leek
Bioinformatics 31 (17), 2778-2784, 2015
1122015
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2016
1032016
The DNA data deluge: fast, efficient genome sequencing machines are spewing out more data than geneticists can analyze
MC Schatz, B Langmead
Ieee Spectrum 50 (7), 26, 2013
922013
Large-scale hypomethylated blocks associated with Epstein-Barr virus–induced B-cell immortalization
KD Hansen, S Sabunciyan, B Langmead, N Nagy, R Curley, G Klein, ...
Genome research 24 (2), 177-184, 2014
892014
Alignment of next-generation sequencing reads
K Reinert, B Langmead, D Weese, DJ Evers
Annual review of genomics and human genetics 16, 133-151, 2015
752015
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