Ben Langmead
Ben Langmead
Associate Professor of Computer Science, Johns Hopkins University
Verified email at cs.jhu.edu - Homepage
Title
Cited by
Cited by
Year
Fast gapped-read alignment with Bowtie 2
B Langmead, SL Salzberg
Nature methods 9 (4), 357, 2012
207542012
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
B Langmead, C Trapnell, M Pop, SL Salzberg
Genome biology 10 (3), R25, 2009
166932009
HISAT: a fast spliced aligner with low memory requirements
D Kim, B Langmead, SL Salzberg
Nature methods 12 (4), 357-360, 2015
46322015
Tackling the widespread and critical impact of batch effects in high-throughput data
JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ...
Nature Reviews Genetics 11 (10), 733-739, 2010
13312010
Increased methylation variation in epigenetic domains across cancer types
KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ...
Nature genetics 43 (8), 768, 2011
9532011
Aligning short sequencing reads with Bowtie
B Langmead
Current protocols in bioinformatics 32 (1), 11.7. 1-11.7. 14, 2010
7752010
Searching for SNPs with cloud computing
B Langmead, MC Schatz, J Lin, M Pop, SL Salzberg
Genome biology 10 (11), 1-10, 2009
5562009
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
KD Hansen, B Langmead, RA Irizarry
Genome biology 13 (10), R83, 2012
4422012
Cloud-scale RNA-sequencing differential expression analysis with Myrna
B Langmead, KD Hansen, JT Leek
Genome biology 11 (8), R83, 2010
3642010
Cloud computing and the DNA data race
MC Schatz, B Langmead, SL Salzberg
Nature biotechnology 28 (7), 691-693, 2010
3332010
Ballgown bridges the gap between transcriptome assembly and expression analysis
AC Frazee, G Pertea, AE Jaffe, B Langmead, SL Salzberg, JT Leek
Nature biotechnology 33 (3), 243-246, 2015
2962015
Reversible switching between epigenetic states in honeybee behavioral subcastes
BR Herb, F Wolschin, KD Hansen, MJ Aryee, B Langmead, R Irizarry, ...
Nature neuroscience 15 (10), 1371-1373, 2012
2632012
Lighter: fast and memory-efficient sequencing error correction without counting
L Song, L Florea, B Langmead
Genome biology 15 (11), 509, 2014
1702014
ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets
AC Frazee, B Langmead, JT Leek
BMC bioinformatics 12 (1), 449, 2011
1692011
Reproducible RNA-seq analysis using recount2
L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ...
Nature biotechnology 35 (4), 319-321, 2017
1682017
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
1342018
Polyester: simulating RNA-seq datasets with differential transcript expression
AC Frazee, AE Jaffe, B Langmead, JT Leek
Bioinformatics 31 (17), 2778-2784, 2015
1322015
The DNA data deluge
MC Schatz, B Langmead
Ieee Spectrum 50 (7), 28-33, 2013
1052013
Improved metagenomic analysis with Kraken 2
DE Wood, J Lu, B Langmead
Genome biology 20 (1), 257, 2019
982019
Large-scale hypomethylated blocks associated with Epstein-Barr virus–induced B-cell immortalization
KD Hansen, S Sabunciyan, B Langmead, N Nagy, R Curley, G Klein, ...
Genome research 24 (2), 177-184, 2014
942014
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