Ben Langmead
Ben Langmead
Associate Professor of Computer Science, Johns Hopkins University
Verified email at cs.jhu.edu - Homepage
Title
Cited by
Cited by
Year
Fast gapped-read alignment with Bowtie 2
B Langmead, SL Salzberg
Nature methods 9 (4), 357-359, 2012
274802012
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
B Langmead, C Trapnell, M Pop, SL Salzberg
Genome biology 10 (3), 1-10, 2009
188802009
HISAT: a fast spliced aligner with low memory requirements
D Kim, B Langmead, SL Salzberg
Nature methods 12 (4), 357-360, 2015
75362015
Tackling the widespread and critical impact of batch effects in high-throughput data
JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ...
Nature Reviews Genetics 11 (10), 733-739, 2010
15462010
Increased methylation variation in epigenetic domains across cancer types
KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ...
Nature genetics 43 (8), 768-775, 2011
10442011
Aligning short sequencing reads with Bowtie
B Langmead
Current protocols in bioinformatics 32 (1), 11.7. 1-11.7. 14, 2010
9612010
Improved metagenomic analysis with Kraken 2
DE Wood, J Lu, B Langmead
Genome biology 20 (1), 1-13, 2019
6412019
Searching for SNPs with cloud computing
B Langmead, MC Schatz, J Lin, M Pop, SL Salzberg
Genome biology 10 (11), 1-10, 2009
6062009
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
KD Hansen, B Langmead, RA Irizarry
Genome biology 13 (10), 1-10, 2012
5282012
Ballgown bridges the gap between transcriptome assembly and expression analysis
AC Frazee, G Pertea, AE Jaffe, B Langmead, SL Salzberg, JT Leek
Nature biotechnology 33 (3), 243-246, 2015
434*2015
Cloud-scale RNA-sequencing differential expression analysis with Myrna
B Langmead, KD Hansen, JT Leek
Genome biology 11 (8), 1-11, 2010
3922010
Cloud computing and the DNA data race
MC Schatz, B Langmead, SL Salzberg
Nature biotechnology 28 (7), 691-693, 2010
3572010
Reversible switching between epigenetic states in honeybee behavioral subcastes
BR Herb, F Wolschin, KD Hansen, MJ Aryee, B Langmead, R Irizarry, ...
Nature neuroscience 15 (10), 1371-1373, 2012
3092012
Reproducible RNA-seq analysis using recount2
L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ...
Nature biotechnology 35 (4), 319-321, 2017
2392017
Lighter: fast and memory-efficient sequencing error correction without counting
L Song, L Florea, B Langmead
Genome biology 15 (11), 1-13, 2014
2052014
Polyester: simulating RNA-seq datasets with differential transcript expression
AC Frazee, AE Jaffe, B Langmead, JT Leek
Bioinformatics 31 (17), 2778-2784, 2015
1912015
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
1842018
ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets
AC Frazee, B Langmead, JT Leek
BMC bioinformatics 12 (1), 1-5, 2011
1742011
Scaling read aligners to hundreds of threads on general-purpose processors
B Langmead, C Wilks, V Antonescu, R Charles
Bioinformatics 35 (3), 421-432, 2019
1582019
Cloud computing for genomic data analysis and collaboration
B Langmead, A Nellore
Nature Reviews Genetics 19 (4), 208-219, 2018
1452018
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