|An integrated encyclopedia of DNA elements in the human genome|
ENCODE Project Consortium
|A user’s guide to the encyclopedia of DNA elements (ENCODE)|
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
|Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors|
J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ...
Genome research 22 (9), 1798-1812, 2012
|Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells|
O Yildirim, R Li, JH Hung, PB Chen, X Dong, LS Ee, Z Weng, OJ Rando, ...
Cell 147 (7), 1498-1510, 2011
|An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes|
XZ Li, CK Roy, X Dong, E Bolcun-Filas, J Wang, BW Han, J Xu, MJ Moore, ...
Molecular cell 50 (1), 67-81, 2013
|Modeling gene expression using chromatin features in various cellular contexts|
X Dong, MC Greven, A Kundaje, S Djebali, JB Brown, C Cheng, ...
Genome biology 13 (9), 1, 2012
|Factorbook. org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium|
J Wang, J Zhuang, S Iyer, XY Lin, MC Greven, BH Kim, J Moore, ...
Nucleic Acids Research, 2012
|Understanding transcriptional regulation by integrative analysis of transcription factor binding data|
C Cheng, R Alexander, R Min, J Leng, KY Yip, J Rozowsky, KK Yan, ...
Genome research 22 (9), 1658-1667, 2012
|β2-Adrenoreceptor is a regulator of the α-synuclein gene driving risk of Parkinson’s disease|
S Mittal, K Bjørnevik, DS Im, A Flierl, X Dong, JJ Locascio, KM Abo, ...
Science 357 (6354), 891-898, 2017
|Two independent transcription initiation codes overlap on vertebrate core promoters|
V Haberle, N Li, Y Hadzhiev, C Plessy, C Previti, C Nepal, J Gehrig, ...
Nature 507 (7492), 381-385, 2014
|Transcriptional features of genomic regulatory blocks|
A Akalin, D Fredman, E Arner, X Dong, JC Bryne, H Suzuki, CO Daub, ...
Genome biology 10 (4), 1, 2009
|MicroRNAs located in the Hox gene clusters are implicated in huntington's disease pathogenesis|
AG Hoss, VK Kartha, X Dong, JC Latourelle, A Dumitriu, TC Hadzi, ...
PLoS Genet 10 (2), e1004188, 2014
|Specifically neuropathic Gaucher's mutations accelerate cognitive decline in Parkinson's|
G Liu, B Boot, JJ Locascio, IE Jansen, S Winder‐Rhodes, S Eberly, ...
Annals of neurology 80 (5), 674-685, 2016
|Differential evolution of the 13 Atlantic salmon Hox clusters|
S Mungpakdee, HC Seo, AR Angotzi, X Dong, A Akalin, D Chourrout
Molecular biology and evolution 25 (7), 1333-1343, 2008
|The correlation between histone modifications and gene expression|
X Dong, Z Weng
Epigenomics 5 (2), 113-116, 2013
|Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons|
X Dong, P Navratilova, D Fredman, Ø Drivenes, TS Becker, B Lenhard
Nucleic acids research 38 (4), 1071-1085, 2010
|Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains|
G Bai, I Cheung, HP Shulha, JE Coelho, P Li, X Dong, M Jakovcevski, ...
Human molecular genetics, ddu561, 2014
|Association between α-synuclein blood transcripts and early, neuroimaging-supported Parkinson’s disease|
JJ Locascio, S Eberly, Z Liao, G Liu, AN Hoesing, K Duong, ...
Brain 138 (9), 2659-2671, 2015
|The role of H3K4me3 in transcriptional regulation is altered in Huntington’s disease|
X Dong, J Tsuji, A Labadorf, P Roussos, JF Chen, RH Myers, S Akbarian, ...
PloS one 10 (12), e0144398, 2015
|Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes|
X Dong, D Fredman, B Lenhard
Genome biology 10 (8), 1, 2009