Mark James Cowley
Mark James Cowley
Computational Biology Group leader, Children's Cancer Institute and Associate Professor at UNSW
Verified email at - Homepage
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Genomic analyses identify molecular subtypes of pancreatic cancer
P Bailey, DK Chang, K Nones, AL Johns, AM Patch, MC Gingras, ...
Nature 531 (7592), 47-52, 2016
Whole genomes redefine the mutational landscape of pancreatic cancer
N Waddell, M Pajic, AM Patch, DK Chang, KS Kassahn, P Bailey, ...
Nature 518 (7540), 495-501, 2015
Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes
AV Biankin, N Waddell, KS Kassahn, MC Gingras, LB Muthuswamy, ...
Nature 491 (7424), 399-405, 2012
Whole-genome landscape of pancreatic neuroendocrine tumours
A Scarpa, DK Chang, K Nones, V Corbo, AM Patch, P Bailey, RT Lawlor, ...
Nature 543 (7643), 65-71, 2017
PINA v2. 0: mining interactome modules
MJ Cowley, M Pinese, KS Kassahn, N Waddell, JV Pearson, ...
Nucleic acids research 40 (D1), D862-D865, 2012
The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma
PA Pérez-Mancera, AG Rust, L van der Weyden, G Kristiansen, A Li, ...
Nature, 2012
Next-generation sequencing and emerging technologies
KR Kumar, MJ Cowley, RL Davis
Seminars in thrombosis and hemostasis, 2024
Inheritance of coronary artery disease in men: an analysis of the role of the Y chromosome
FJ Charchar, LDS Bloomer, TA Barnes, MJ Cowley, CP Nelson, Y Wang, ...
The Lancet 379 (9819), 915-922, 2012
Genome‐wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT‐ROBO, ITGA2 and MET signaling
K Nones, N Waddell, S Song, AM Patch, D Miller, A Johns, J Wu, ...
International journal of cancer 135 (5), 1110-1118, 2014
Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinoma
KM Mann, JM Ward, CCK Yew, A Kovochich, DW Dawson, MA Black, ...
Proceedings of the National Academy of Sciences 109 (16), 5934-5941, 2012
Whole genome, transcriptome and methylome profiling enhances actionable target discovery in high-risk pediatric cancer
M Wong, C Mayoh, LMS Lau, DA Khuong-Quang, M Pinese, A Kumar, ...
Nature medicine 26 (11), 1742-1753, 2020
Mutation allele burden remains unchanged in chronic myelomonocytic leukaemia responding to hypomethylating agents
J Merlevede, N Droin, T Qin, K Meldi, K Yoshida, M Morabito, E Chautard, ...
Nature communications 7 (1), 10767, 2016
Hypermutation in pancreatic cancer
JL Humphris, AM Patch, K Nones, PJ Bailey, AL Johns, S McKay, ...
Gastroenterology 152 (1), 68-74. e2, 2017
Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity
MW Coolen, C Stirzaker, JZ Song, AL Statham, Z Kassir, CS Moreno, ...
Nature cell biology 12 (3), 235-246, 2010
Infant high-grade gliomas comprise multiple subgroups characterized by novel targetable gene fusions and favorable outcomes
M Clarke, A Mackay, B Ismer, JC Pickles, RG Tatevossian, S Newman, ...
Cancer discovery 10 (7), 942-963, 2020
Whole-exome sequencing reanalysis at 12 months boosts diagnosis and is cost-effective when applied early in Mendelian disorders
LJ Ewans, D Schofield, R Shrestha, Y Zhu, V Gayevskiy, K Ying, C Walsh, ...
Genetics in Medicine 20 (12), 1564-1574, 2018
Histomolecular phenotypes and outcome in adenocarcinoma of the ampulla of vater
DK Chang, NB Jamieson, AL Johns, CJ Scarlett, M Pajic, A Chou, ...
Journal of clinical oncology 31 (10), 1348-1356, 2013
Differential regulation of the Let-7 family of microRNAs in CD4+ T cells alters IL-10 expression
S Swaminathan, K Suzuki, N Seddiki, W Kaplan, MJ Cowley, CL Hood, ...
The Journal of Immunology 188 (12), 6238-6246, 2012
Whole genome sequencing improves outcomes of genetic testing in patients with hypertrophic cardiomyopathy
RD Bagnall, J Ingles, ME Dinger, MJ Cowley, SB Ross, AE Minoche, S Lal, ...
Journal of the American College of Cardiology 72 (4), 419-429, 2018
Normalization and statistical analysis of quantitative proteomics data generated by metabolic labeling
L Ting, MJ Cowley, SL Hoon, M Guilhaus, MJ Raftery, R Cavicchioli
Molecular & Cellular Proteomics 8 (10), 2227-2242, 2009
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