Harm van Bakel
Harm van Bakel
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Determination and inference of eukaryotic transcription factor sequence specificity
MT Weirauch, A Yang, M Albu, AG Cote, A Montenegro-Montero, P Drewe, ...
Cell 158 (6), 1431-1443, 2014
Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder
MJ Gandal, P Zhang, E Hadjimichael, RL Walker, C Chen, S Liu, H Won, ...
Science 362 (6420), eaat8127, 2018
The draft genome and transcriptome of Cannabis sativa
H Van Bakel, JM Stout, AG Cote, CM Tallon, AG Sharpe, TR Hughes, ...
Genome biology 12 (10), 1-18, 2011
Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes
L Franke, H Van Bakel, L Fokkens, ED De Jong, M Egmont-Petersen, ...
The American Journal of Human Genetics 78 (6), 1011-1025, 2006
Most “dark matter” transcripts are associated with known genes
H Van Bakel, C Nislow, BJ Blencowe, TR Hughes
PLoS biology 8 (5), e1000371, 2010
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters
G Badis, ET Chan, H van Bakel, L Pena-Castillo, D Tillo, K Tsui, ...
Molecular cell 32 (6), 878-887, 2008
SARS-CoV-2 Omicron virus causes attenuated disease in mice and hamsters
PJ Halfmann, S Iida, K Iwatsuki-Horimoto, T Maemura, M Kiso, ...
Nature 603 (7902), 687-692, 2022
Activity of convalescent and vaccine serum against SARS-CoV-2 Omicron
JM Carreño, H Alshammary, J Tcheou, G Singh, AJ Raskin, H Kawabata, ...
Nature 602 (7898), 682-688, 2022
Shedding of viable SARS-CoV-2 after immunosuppressive therapy for cancer
T Aydillo, AS Gonzalez-Reiche, S Aslam, A van de Guchte, Z Khan, ...
New England journal of medicine 383 (26), 2586-2588, 2020
Introductions and early spread of SARS-CoV-2 in the New York City area
AS Gonzalez-Reiche, MM Hernandez, MJ Sullivan, B Ciferri, ...
Science 369 (6501), 297-301, 2020
Characterization of the human ESC transcriptome by hybrid sequencing
KF Au, V Sebastiano, PT Afshar, JD Durruthy, L Lee, BA Williams, ...
Proceedings of the National Academy of Sciences 110 (50), E4821-E4830, 2013
Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors
P Kemmeren, K Sameith, LAL Van De Pasch, JJ Benschop, TL Lenstra, ...
Cell 157 (3), 740-752, 2014
The psychencode project
S Akbarian, C Liu, JA Knowles, FM Vaccarino, PJ Farnham, GE Crawford, ...
Nature neuroscience 18 (12), 1707-1712, 2015
Origins of the 2009 H1N1 influenza pandemic in swine in Mexico
I Mena, MI Nelson, F Quezada-Monroy, J Dutta, R Cortes-Fernández, ...
Elife 5, e16777, 2016
Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets
J van de Peppel, N Kettelarij, H van Bakel, TTJP Kockelkorn, ...
Molecular cell 19 (4), 511-522, 2005
Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis
BRG Gordon, Y Li, L Wang, A Sintsova, H Van Bakel, S Tian, WW Navarre, ...
Proceedings of the National Academy of Sciences 107 (11), 5154-5159, 2010
Efficacy of antibodies and antiviral drugs against Omicron BA. 2.12. 1, BA. 4, and BA. 5 subvariants
E Takashita, S Yamayoshi, V Simon, H Van Bakel, EM Sordillo, A Pekosz, ...
New England Journal of Medicine 387 (5), 468-470, 2022
Monitoring global messenger RNA changes in externally controlled microarray experiments
J van de Peppel, P Kemmeren, H van Bakel, M Radonjic, D van Leenen, ...
EMBO reports 4 (4), 387-393, 2003
SARS-CoV-2 mRNA vaccination induces functionally diverse antibodies to NTD, RBD, and S2
F Amanat, M Thapa, T Lei, SMS Ahmed, DC Adelsberg, JM Carreño, ...
Cell 184 (15), 3936-3948. e10, 2021
A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci
KU Laverty, JM Stout, MJ Sullivan, H Shah, N Gill, L Holbrook, G Deikus, ...
Genome research 29 (1), 146-156, 2019
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