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Danil Pupov
Danil Pupov
senior scientist, IMG of Kurchatov Institute
Verified email at pupov.ru - Homepage
Title
Cited by
Cited by
Year
Structural basis of transcription initiation by bacterial RNA polymerase holoenzyme
RS Basu, BA Warner, V Molodtsov, D Pupov, D Esyunina, ...
Journal of Biological Chemistry 289 (35), 24549-24559, 2014
1652014
Distinct functions of the RNA polymerase σ subunit region 3.2 in RNA priming and promoter escape
D Pupov, I Kuzin, I Bass, A Kulbachinskiy
Nucleic acids research 42 (7), 4494-4504, 2014
672014
Structural basis of ribosomal RNA transcription regulation
Y Shin, MZ Qayyum, D Pupov, D Esyunina, A Kulbachinskiy, ...
Nature communications 12 (1), 1-12, 2021
512021
Multiple roles of the RNA polymerase β′ SW2 region in transcription initiation, promoter escape, and RNA elongation
D Pupov, N Miropolskaya, A Sevostyanova, I Bass, I Artsimovitch, ...
Nucleic acids research 38 (17), 5784-5796, 2010
342010
Cysteine proteinases of microorganisms and viruses
GN Rudenskaya, DV Pupov
Biochemistry (Moscow) 73 (1), 1-13, 2008
342008
Lineage-specific variations in the trigger loop modulate RNA proofreading by bacterial RNA polymerases
D Esyunina, M Turtola, D Pupov, I Bass, S Klimašauskas, G Belogurov, ...
Nucleic acids research 44 (3), 1298-1308, 2016
282016
Mutations in the CRE pocket of bacterial RNA polymerase affect multiple steps of transcription
I Petushkov, D Pupov, I Bass, A Kulbachinskiy
Nucleic acids research 43 (12), 5798-5809, 2015
272015
Distinct functions of regions 1.1 and 1.2 of RNA polymerase σ subunits from Escherichia coli and Thermus aquaticus in transcription initiation
N Miropolskaya, A Ignatov, I Bass, E Zhilina, D Pupov, A Kulbachinskiy
Journal of Biological Chemistry 287 (28), 23779-23789, 2012
192012
Region 3.2 of the σ factor controls the stability of rRNA promoter complexes and potentiates their repression by DksA
D Pupov, I Petushkov, D Esyunina, KS Murakami, A Kulbachinskiy
Nucleic acids research 46 (21), 11477-11487, 2018
182018
Interplay between σ region 3.2 and secondary channel factors during promoter escape by bacterial RNA polymerase
I Petushkov, D Esyunina, V Mekler, K Severinov, D Pupov, ...
Biochemical Journal 474 (24), 4053-4064, 2017
182017
Distinct effects of DNA lesions on RNA synthesis by Escherichia coli RNA polymerase
D Pupov, A Ignatov, A Agapov, A Kulbachinskiy
Biochemical and biophysical research communications 510 (1), 122-127, 2019
152019
Isolation and properties of Serratia proteamaculans 94 cysteine protease
NV Mozhina, OA Burmistrova, DV Pupov, GN Rudenskaya, ...
Russian Journal of Bioorganic Chemistry 34 (3), 274-279, 2008
112008
Analysis of RNA cleavage by RNA polymerases from Escherichia coli and Deinococcus radiodurans
DV Pupov, NA Barinova, AV Kulbachinskiy
Biochemistry (Moscow) 73 (6), 725-729, 2008
102008
Rewiring of growth-dependent transcription regulation by a point mutation in region 1.1 of the housekeeping σ factor
P Pletnev, D Pupov, L Pshanichnaya, D Esyunina, I Petushkov, ...
Nucleic acids research 48 (19), 10802-10819, 2020
92020
Regulation of transcription initiation by Gfh factors from Deinococcus radiodurans
A Agapov, D Esyunina, D Pupov, A Kulbachinskiy
Biochemical Journal 473 (23), 4493-4505, 2016
72016
Single-strand promoter traps for bacterial RNA polymerase
D Pupov, D Esyunina, A Feklistov, A Kulbachinskiy
Biochemical Journal 452 (2), 241-248, 2013
62013
Universal functions of the σ finger in alternative σ factors during transcription initiation by bacterial RNA polymerase
A Oguienko, I Petushkov, D Pupov, D Esyunina, A Kulbachinskiy
RNA biology, 1-10, 2021
52021
The s24 Subunit of Escherichia coli RNA Polymerase Can Induce Transcriptional Pausing in vitro
AB Shikalov, DM Esyunina, DV Pupov, AV Kulbachinskiy, IV Petushkov
Biochemistry (Moscow) 84 (4), 2019
42019
Structural dynamics of the active center of multisubunit RNA polymerases during RNA synthesis and proofreading
DV Pupov, AV Kulbachinskiy
Molecular biology 44 (4), 503-519, 2010
32010
Dual role of the σ factor in primer RNA synthesis by bacterial RNA polymerase
D Esyunina, D Pupov, A Kulbachinskiy
FEBS letters 593 (3), 361-368, 2019
12019
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