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Li Shen
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Integrative analysis of 111 reference human epigenomes
Roadmap Epigenomics Consortium Integrative analysis coordination Kundaje ...
Nature 518 (7539), 317-330, 2015
5927*2015
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
RD Hawkins, GC Hon, LK Lee, QM Ngo, R Lister, M Pelizzola, LE Edsall, ...
Cell stem cell 6 (5), 479-491, 2010
9742010
Deep learning to improve breast cancer detection on screening mammography
L Shen, LR Margolies, JH Rothstein, E Fluder, R McBride, W Sieh
Scientific reports 9 (1), 12495, 2019
9172019
ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
L Shen, N Shao, X Liu, E Nestler
BMC genomics 15 (1), 284, 2014
8262014
Sex-specific transcriptional signatures in human depression
B Labonté, O Engmann, I Purushothaman, C Menard, J Wang, C Tan, ...
Nature medicine 23 (9), 1102-1111, 2017
6002017
diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates
L Shen, NY Shao, X Liu, I Maze, J Feng, EJ Nestler
PloS one 8 (6), e65598, 2013
3792013
Epigenetic regulation of brain region-specific microglia clearance activity
P Ayata, A Badimon, HJ Strasburger, MK Duff, SE Montgomery, YHE Loh, ...
Nature neuroscience 21 (8), 1049-1060, 2018
3632018
Sex differences in nucleus accumbens transcriptome profiles associated with susceptibility versus resilience to subchronic variable stress
GE Hodes, ML Pfau, I Purushothaman, HF Ahn, SA Golden, DJ Christoffel, ...
Journal of Neuroscience 35 (50), 16362-16376, 2015
3622015
Histone serotonylation is a permissive modification that enhances TFIID binding to H3K4me3
LA Farrelly, RE Thompson, S Zhao, AE Lepack, Y Lyu, NV Bhanu, ...
Nature 567 (7749), 535-539, 2019
3502019
Early life stress confers lifelong stress susceptibility in mice via ventral tegmental area OTX2
CJ Peña, HG Kronman, DM Walker, HM Cates, RC Bagot, ...
Science 356 (6343), 1185-1188, 2017
3322017
Evaluation of combined artificial intelligence and radiologist assessment to interpret screening mammograms
T Schaffter, DSM Buist, CI Lee, Y Nikulin, D Ribli, Y Guan, W Lotter, Z Jie, ...
JAMA network open 3 (3), e200265-e200265, 2020
3132020
Critical role of histone turnover in neuronal transcription and plasticity
I Maze, W Wenderski, KM Noh, RC Bagot, N Tzavaras, I Purushothaman, ...
Neuron 87 (1), 77-94, 2015
3042015
Circuit-wide transcriptional profiling reveals brain region-specific gene networks regulating depression susceptibility
RC Bagot, HM Cates, I Purushothaman, ZS Lorsch, DM Walker, J Wang, ...
Neuron 90 (5), 969-983, 2016
2942016
HDAC2 regulates atypical antipsychotic responses through the modulation of mGlu2 promoter activity
M Kurita, T Holloway, A García-Bea, A Kozlenkov, AK Friedman, ...
Nature Neuroscience 15 (9), 1245-1254, 2012
2862012
β-catenin mediates stress resilience through Dicer1/microRNA regulation
C Dias, J Feng, H Sun, NY Shao, MS Mazei-Robison, D Damez-Werno, ...
Nature 516 (7529), 51-55, 2014
2722014
ENL links histone acetylation to oncogenic gene expression in acute myeloid leukaemia
L Wan, H Wen, Y Li, J Lyu, Y Xi, T Hoshii, JK Joseph, X Wang, YHE Loh, ...
Nature 543 (7644), 265-269, 2017
2372017
Neurobiological Sequelae of Witnessing Stressful Events in Adult Mice
BL Warren, VF Vialou, SD Iñiguez, LF Alcantara, KN Wright, J Feng, ...
Biological Psychiatry, 2012
2302012
Locus-specific epigenetic remodeling controls addiction-and depression-related behaviors
EA Heller, HM Cates, CJ Peña, H Sun, N Shao, J Feng, SA Golden, ...
Nature neuroscience 17 (12), 1720-1727, 2014
2262014
GeneOverlap: Test and visualize gene overlaps
L Shen
Bioconductor package, 2013
209*2013
Cocaine dynamically regulates heterochromatin and repetitive element unsilencing in nucleus accumbens
I Maze, J Feng, MB Wilkinson, HS Sun, L Shen, EJ Nestler
Proceedings of the National Academy of Sciences 108 (7), 3035, 2011
2092011
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