Caroline Colijn
Caroline Colijn
Simon Fraser University, Department of Mathematics
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Cited by
Cited by
Evidence for transmission of COVID-19 prior to symptom onset
LC Tindale, JE Stockdale, M Coombe, ES Garlock, WYV Lau, M Saraswat, ...
Elife 9, e57149, 2020
Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production
C Colijn, A Brandes, J Zucker, DS Lun, B Weiner, MR Farhat, TY Cheng, ...
PLoS computational biology 5 (8), e1000489, 2009
A mathematical model of hematopoiesis—I. Periodic chronic myelogenous leukemia
C Colijn, MC Mackey
Journal of Theoretical Biology 237 (2), 117-132, 2005
Effects of smoking and solid-fuel use on COPD, lung cancer, and tuberculosis in China: a time-based, multiple risk factor, modelling study
HH Lin, M Murray, T Cohen, C Colijn, M Ezzati
The Lancet 372 (9648), 1473-1483, 2008
The origins and potential future of SARS-CoV-2 variants of concern in the evolving COVID-19 pandemic
SP Otto, T Day, J Arino, C Colijn, J Dushoff, M Li, S Mechai, ...
Current Biology 31 (14), R918-R929, 2021
Genomic infectious disease epidemiology in partially sampled and ongoing outbreaks
X Didelot, C Fraser, J Gardy, C Colijn
Molecular biology and evolution 34 (4), 997-1007, 2017
Antimicrobials: a global alliance for optimizing their rational use in intra-abdominal infections (AGORA)
M Sartelli, DG Weber, E Ruppé, M Bassetti, BJ Wright, L Ansaloni, ...
World journal of emergency surgery 11, 1-32, 2016
Bayesian inference of infectious disease transmission from whole-genome sequence data
X Didelot, J Gardy, C Colijn
Molecular biology and evolution 31 (7), 1869-1879, 2014
Mixed-strain Mycobacterium tuberculosis infections and the implications for tuberculosis treatment and control
T Cohen, PD van Helden, D Wilson, C Colijn, MM McLaughlin, I Abubakar, ...
Clinical microbiology reviews 25 (4), 708-719, 2012
Whole-genome sequencing for routine pathogen surveillance in public health: a population snapshot of invasive Staphylococcus aureus in Europe
DM Aanensen, EJ Feil, MTG Holden, J Dordel, CA Yeats, A Fedosejev, ...
MBio 7 (3), 10.1128/mbio. 00444-16, 2016
Exogenous re-infection and the dynamics of tuberculosis epidemics: local effects in a network model of transmission
T Cohen, C Colijn, B Finklea, M Murray
Journal of the Royal Society Interface 4 (14), 523-531, 2007
No coexistence for free: neutral null models for multistrain pathogens
M Lipsitch, C Colijn, T Cohen, WP Hanage, C Fraser
Epidemics 1 (1), 2-13, 2009
A mathematical model of hematopoiesis: II. Cyclical neutropenia
C Colijn, MC Mackey
Journal of theoretical biology 237 (2), 133-146, 2005
treespace: Statistical exploration of landscapes of phylogenetic trees
T Jombart, M Kendall, J Almagro‐Garcia, C Colijn
Molecular ecology resources 17 (6), 1385-1392, 2017
Interpreting whole genome sequencing for investigating tuberculosis transmission: a systematic review
HA Hatherell, C Colijn, HR Stagg, C Jackson, JR Winter, I Abubakar
BMC medicine 14, 1-13, 2016
Beyond the SNP threshold: identifying outbreak clusters using inferred transmissions
J Stimson, J Gardy, B Mathema, V Crudu, T Cohen, C Colijn
Molecular biology and evolution 36 (3), 587-603, 2019
Mapping phylogenetic trees to reveal distinct patterns of evolution
M Kendall, C Colijn
Molecular biology and evolution 33 (10), 2735-2743, 2016
Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks
D Klinkenberg, JA Backer, X Didelot, C Colijn, J Wallinga
PLoS computational biology 13 (5), e1005495, 2017
Quantifying the impact of COVID-19 control measures using a Bayesian model of physical distancing
SC Anderson, AM Edwards, M Yerlanov, N Mulberry, JE Stockdale, ...
PLoS computational biology 16 (12), e1008274, 2020
What is the mechanism for persistent coexistence of drug-susceptible and drug-resistant strains of Streptococcus pneumoniae?
C Colijn, T Cohen, C Fraser, W Hanage, E Goldstein, N Givon-Lavi, ...
Journal of The Royal Society Interface 7 (47), 905-919, 2010
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