Murray Patterson

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Nadia PisantiUniversity of Pisa & Erable Team INRIAVerified email at di.unipi.it
Jan ManuchComputer Science, University of British ColumbiaVerified email at cs.ubc.ca
Tobias MarschallHeinrich Heine University DüsseldorfVerified email at hhu.de
Alexander SchönhuthSenior Researcher, Centrum Wiskunde & Informatica, AmsterdamVerified email at cwi.nl
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Cedric ChauveProfessor of Mathematics, Simon Fraser UniversityVerified email at sfu.ca
Gianluca Della VedovaUniversità degli Studi di Milano-BicoccaVerified email at dellavedova.org
Leen StougieSenior Researcher CWI, Prof. of Operations Research Vrije Universiteit, AmsterdamVerified email at cwi.nl
Leo van IerselAssociate professor, TU DelftVerified email at tudelft.nl
Paola BonizzoniUniversity of Milano BicoccaVerified email at unimib.it
Eric TannierINRIA, Université de Lyon 1Verified email at inria.fr
Simone CiccolellaUniversity of Study Milano-BicoccaVerified email at campus.unimib.it
Shilpa GargUniversity of CopenhagenVerified email at bio.ku.dk
mauricio abel soto gomezPostdoc, Università di MIlano-BicoccaVerified email at unimib.it
Vincent DaubincnrsVerified email at univ-lyon1.fr
Sarwan AliGeorgia State UniversityVerified email at student.gsu.edu
Massimo TorquatiComputer Science Department University of Pisa, ItalyVerified email at unipi.it
Andrea BraccialiSICSA Lecturer, Stirling UniversityVerified email at cs.stir.ac.uk
Marco AldinucciFull Professor in Computer Science, University of TorinoVerified email at unito.it
Raffaella RizziRicercatore confermato in Informatica, Università degli Studi di Milano-BicoccaVerified email at disco.unimib.it

Murray Patterson

Assistant Professor, Georgia State University

Verified email at cs.gsu.edu - Homepage

Computational Biology Algorithms Combinatorics


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WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads M Patterson, T Marschall, N Pisanti, L Van Iersel, L Stougie, GW Klau, ... Journal of Computational Biology 22 (6), 498-509, 2015	159	2015
WhatsHap: fast and accurate read-based phasing M Martin, M Patterson, S Garg, S Fischer, N Pisanti, GW Klau, ... BioRxiv, 085050, 2016	74*	2016
WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads M Patterson, T Marschall, N Pisanti, L van Iersel, L Stougie, GW Klau, ... International Conference on Research in Computational Molecular Biology, 237-249, 2014	39	2014
DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies W Duchemin, Y Anselmetti, M Patterson, Y Ponty, S Bérard, C Chauve, ... Genome biology and evolution 9 (5), 1312-1319, 2017	37	2017
Linearization of ancestral multichromosomal genomes J Maňuch, M Patterson, R Wittler, C Chauve, E Tannier BMC bioinformatics 13 (19), 1-11, 2012	34	2012
Lateral gene transfer, rearrangement, reconciliation M Patterson, G Szöllősi, V Daubin, E Tannier BMC bioinformatics 14 (15), 1-7, 2013	30	2013
Grounding for model expansion in k-guarded formulas with inductive definitions MD Patterson, Y Liu, E Ternovska, A Gupta Simon Fraser University, 2006	26	2006
Inferring cancer progression from single-cell sequencing while allowing mutation losses S Ciccolella, C Ricketts, M Soto Gomez, M Patterson, D Silverbush, ... Bioinformatics 37 (3), 326-333, 2021	17	2021
On the gapped consecutive-ones property C Chauve, J Maňuch, M Patterson Electronic Notes in Discrete Mathematics 34, 121-125, 2009	17	2009
Consistency of sequence-based gene clusters R Wittler, J Maňuch, M Patterson, J Stoye Journal of Computational Biology 18 (9), 1023-1039, 2011	15	2011
WhatsHap: fast and accurate read-based phasing. bioRxiv, 085050 M Martin, M Patterson, S Garg, SO Fischer, N Pisanti, GW Klau, ...	13	2016
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era R Rizzi, S Beretta, M Patterson, Y Pirola, M Previtali, G Della Vedova, ... Quantitative Biology 7 (4), 278-292, 2019	12	2019
Hypergraph covering problems motivated by genome assembly questions C Chauve, M Patterson, A Rajaraman International Workshop on Combinatorial Algorithms, 428-432, 2013	12	2013
Complexity of finding non-planar rectilinear drawings of graphs J Maňuch, M Patterson, SH Poon, C Thachuk International Symposium on Graph Drawing, 305-316, 2010	11	2010
PWHATSHAP: efficient haplotyping for future generation sequencing A Bracciali, M Aldinucci, M Patterson, T Marschall, N Pisanti, I Merelli, ... BMC bioinformatics 17 (11), 27-41, 2016	10	2016
O Fischer M Martin, M Patterson, S Garg bioRxiv, 2016	10	2016
gpps: An ILP-based approach for inferring cancer progression with mutation losses from single cell data S Ciccolella, MS Gomez, MD Patterson, G Della Vedova, I Hajirasouliha, ... BMC bioinformatics 21 (1), 1-16, 2020	9	2020
The complexity of the gapped consecutive-ones property problem for matrices of bounded maximum degree J Maňuch, M Patterson Journal of Computational Biology 18 (9), 1243-1253, 2011	9	2011
HapCHAT: Adaptive haplotype assembly for efficiently leveraging high coverage in long reads S Beretta, MD Patterson, S Zaccaria, G Della Vedova, P Bonizzoni BMC bioinformatics 19 (1), 1-19, 2018	8	2018
Hardness results on the gapped consecutive-ones property problem J Maňuch, M Patterson, C Chauve Discrete Applied Mathematics 160 (18), 2760-2768, 2012	8	2012

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