Murray Patterson

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Tobias MarschallHeinrich Heine University DüsseldorfVerified email at hhu.de
Nadia PisantiUniversity of Pisa & Erable Team INRIAVerified email at di.unipi.it
Jan ManuchComputer Science, University of British ColumbiaVerified email at cs.ubc.ca
Alexander SchönhuthSenior Researcher, Centrum Wiskunde & Informatica, AmsterdamVerified email at cwi.nl
Gianluca Della VedovaUniversità degli Studi di Milano-BicoccaVerified email at dellavedova.org
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Sarwan AliGeorgia State UniversityVerified email at student.gsu.edu
Cedric ChauveProfessor of Mathematics, Simon Fraser UniversityVerified email at sfu.ca
Paola BonizzoniUniversity of Milano BicoccaVerified email at unimib.it
Leen StougieSenior Researcher CWI, Prof. of Operations Research Vrije Universiteit, AmsterdamVerified email at cwi.nl
Leo van IerselAssociate professor, TU DelftVerified email at tudelft.nl
Simone CiccolellaUniversity of Study Milano-BicoccaVerified email at unimib.it
mauricio abel soto gomezPostdoc, Università di MIlano-BicoccaVerified email at unimib.it
Eric TannierINRIA, Université de Lyon 1Verified email at inria.fr
Shilpa GargUniversity of CopenhagenVerified email at bio.ku.dk
Bikram SahooGeorgia State UniversityVerified email at student.gsu.edu
Raffaella RizziRicercatore confermato in Informatica, Università degli Studi di Milano-BicoccaVerified email at disco.unimib.it
Vincent DaubincnrsVerified email at univ-lyon1.fr
Marcel MartinScience for Life Laboratory, StockholmVerified email at scilifelab.se
Stefano BerettaSan Raffaele Telethon Institute for Gene TherapyVerified email at hsr.it

Murray Patterson

Assistant Professor, Georgia State University

Verified email at cs.gsu.edu - Homepage

Computational Biology Algorithms Combinatorics Data Science


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WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads M Patterson, T Marschall, N Pisanti, L Van Iersel, L Stougie, GW Klau, ... Journal of Computational Biology 22 (6), 498-509, 2015	221	2015
WhatsHap: fast and accurate read-based phasing M Martin, M Patterson, S Garg, SO Fischer, N Pisanti, GW Klau, ... BioRxiv, 085050, 2016	150	2016
DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies W Duchemin, Y Anselmetti, M Patterson, Y Ponty, S Bérard, C Chauve, ... Genome biology and evolution 9 (5), 1312-1319, 2017	43	2017
WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads M Patterson, T Marschall, N Pisanti, L Iersel, L Stougie, GW Klau, ... International Conference on Research in Computational Molecular Biology, 237-249, 2014	42	2014
Linearization of ancestral multichromosomal genomes J Maňuch, M Patterson, R Wittler, C Chauve, E Tannier BMC bioinformatics 13 (19), 1-11, 2012	35	2012
Inferring cancer progression from single-cell sequencing while allowing mutation losses S Ciccolella, C Ricketts, M Soto Gomez, M Patterson, D Silverbush, ... Bioinformatics 37 (3), 326-333, 2021	30	2021
Lateral gene transfer, rearrangement, reconciliation M Patterson, G Szöllősi, V Daubin, E Tannier BMC bioinformatics 14 (15), 1-7, 2013	30	2013
Grounding for model expansion in k-guarded formulas with inductive definitions MD Patterson, Y Liu, E Ternovska, A Gupta Simon Fraser University, 2006	26	2006
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era R Rizzi, S Beretta, M Patterson, Y Pirola, M Previtali, G Della Vedova, ... Quantitative Biology 7 (4), 278-292, 2019	22	2019
On the gapped consecutive-ones property C Chauve, J Maňuch, M Patterson Electronic Notes in Discrete Mathematics 34, 121-125, 2009	18	2009
O Fischer M Martin, M Patterson, S Garg bioRxiv, 2016	16	2016
A k-mer Based Approach for SARS-CoV-2 Variant Identification S Ali, B Sahoo, N Ullah, A Zelikovskiy, M Patterson, I Khan International Symposium on Bioinformatics Research and Applications, 153-164, 2021	15	2021
Consistency of sequence-based gene clusters R Wittler, J Maňuch, M Patterson, J Stoye Journal of Computational Biology 18 (9), 1023-1039, 2011	15	2011
Effective and scalable clustering of SARS-CoV-2 sequences S Ali, TE Ali, MA Khan, I Khan, M Patterson 2021 the 5th International Conference on Big Data Research (ICBDR), 42-49, 2021	14	2021
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data S Ciccolella, M Soto Gomez, MD Patterson, G Della Vedova, ... BMC bioinformatics 21 (1), 1-16, 2020	13	2020
HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads S Beretta, MD Patterson, S Zaccaria, G Della Vedova, P Bonizzoni BMC bioinformatics 19 (1), 1-19, 2018	12	2018
Hypergraph covering problems motivated by genome assembly questions C Chauve, M Patterson, A Rajaraman International Workshop on Combinatorial Algorithms, 428-432, 2013	12	2013
Spike2vec: An efficient and scalable embedding approach for covid-19 spike sequences S Ali, M Patterson 2021 IEEE International Conference on Big Data (Big Data), 1533-1540, 2021	11	2021
Complexity of finding non-planar rectilinear drawings of graphs J Maňuch, M Patterson, SH Poon, C Thachuk International Symposium on Graph Drawing, 305-316, 2010	11	2010
Simpler and faster development of tumor phylogeny pipelines S Ali, S Ciccolella, L Lucarella, GD Vedova, M Patterson Journal of Computational Biology 28 (11), 1142-1155, 2021	10	2021

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