Murray Patterson
Murray Patterson
Assistant Professor, Georgia State University
Verified email at - Homepage
Cited by
Cited by
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads
M Patterson, T Marschall, N Pisanti, L Van Iersel, L Stougie, GW Klau, ...
Journal of Computational Biology 22 (6), 498-509, 2015
WhatsHap: fast and accurate read-based phasing
M Martin, M Patterson, S Garg, SO Fischer, N Pisanti, GW Klau, ...
BioRxiv, 085050, 2016
DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies
W Duchemin, Y Anselmetti, M Patterson, Y Ponty, S Bérard, C Chauve, ...
Genome biology and evolution 9 (5), 1312-1319, 2017
WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads
M Patterson, T Marschall, N Pisanti, L Iersel, L Stougie, GW Klau, ...
International Conference on Research in Computational Molecular Biology, 237-249, 2014
Linearization of ancestral multichromosomal genomes
J Maňuch, M Patterson, R Wittler, C Chauve, E Tannier
BMC bioinformatics 13 (19), 1-11, 2012
Inferring cancer progression from single-cell sequencing while allowing mutation losses
S Ciccolella, C Ricketts, M Soto Gomez, M Patterson, D Silverbush, ...
Bioinformatics 37 (3), 326-333, 2021
Lateral gene transfer, rearrangement, reconciliation
M Patterson, G Szöllősi, V Daubin, E Tannier
BMC bioinformatics 14 (15), 1-7, 2013
Grounding for model expansion in k-guarded formulas with inductive definitions
MD Patterson, Y Liu, E Ternovska, A Gupta
Simon Fraser University, 2006
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era
R Rizzi, S Beretta, M Patterson, Y Pirola, M Previtali, G Della Vedova, ...
Quantitative Biology 7 (4), 278-292, 2019
On the gapped consecutive-ones property
C Chauve, J Maňuch, M Patterson
Electronic Notes in Discrete Mathematics 34, 121-125, 2009
O Fischer
M Martin, M Patterson, S Garg
bioRxiv, 2016
A k-mer Based Approach for SARS-CoV-2 Variant Identification
S Ali, B Sahoo, N Ullah, A Zelikovskiy, M Patterson, I Khan
International Symposium on Bioinformatics Research and Applications, 153-164, 2021
Consistency of sequence-based gene clusters
R Wittler, J Maňuch, M Patterson, J Stoye
Journal of Computational Biology 18 (9), 1023-1039, 2011
Effective and scalable clustering of SARS-CoV-2 sequences
S Ali, TE Ali, MA Khan, I Khan, M Patterson
2021 the 5th International Conference on Big Data Research (ICBDR), 42-49, 2021
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data
S Ciccolella, M Soto Gomez, MD Patterson, G Della Vedova, ...
BMC bioinformatics 21 (1), 1-16, 2020
HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads
S Beretta, MD Patterson, S Zaccaria, G Della Vedova, P Bonizzoni
BMC bioinformatics 19 (1), 1-19, 2018
Hypergraph covering problems motivated by genome assembly questions
C Chauve, M Patterson, A Rajaraman
International Workshop on Combinatorial Algorithms, 428-432, 2013
Spike2vec: An efficient and scalable embedding approach for covid-19 spike sequences
S Ali, M Patterson
2021 IEEE International Conference on Big Data (Big Data), 1533-1540, 2021
Complexity of finding non-planar rectilinear drawings of graphs
J Maňuch, M Patterson, SH Poon, C Thachuk
International Symposium on Graph Drawing, 305-316, 2010
Simpler and faster development of tumor phylogeny pipelines
S Ali, S Ciccolella, L Lucarella, GD Vedova, M Patterson
Journal of Computational Biology 28 (11), 1142-1155, 2021
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