| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 9213 | 2012 |
| Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution International Chicken Genome Sequencing Consortium Nature 432 (7018), 695, 2004 | 2225 | 2004 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355, 2014 | 819 | 2014 |
| Genome analysis of the platypus reveals unique signatures of evolution WC Warren, LDW Hillier, JAM Graves, E Birney, CP Ponting, F Grützner, ... Nature 453 (7192), 175, 2008 | 662 | 2008 |
| Improved pairwise Alignmnet of genomic DNA RS Harris | 641 | 2007 |
| Comparative and demographic analysis of orang-utan genomes DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ... Nature 469 (7331), 529, 2011 | 493 | 2011 |
| Complete Khoisan and Bantu genomes from southern Africa SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ... Nature 463 (7283), 943, 2010 | 427 | 2010 |
| Integrative annotation of chromatin elements from ENCODE data MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ... Nucleic acids research 41 (2), 827-841, 2012 | 394 | 2012 |
| 28-way vertebrate alignment and conservation track in the UCSC Genome Browser W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ... Genome research 17 (12), 1797-1808, 2007 | 265 | 2007 |
| Alignathon: a competitive assessment of whole-genome alignment methods D Earl, N Nguyen, G Hickey, RS Harris, S Fitzgerald, K Beal, I Seledtsov, ... Genome research 24 (12), 2077-2089, 2014 | 65 | 2014 |
| Accurate typing of short tandem repeats from genome-wide sequencing data and its applications A Fungtammasan, G Ananda, SE Hile, MSW Su, C Sun, R Harris, ... Genome research 25 (5), 736-749, 2015 | 50 | 2015 |
| A time-and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y M Tomaszkiewicz, S Rangavittal, M Cechova, RC Sanchez, ... Genome research 26 (4), 530-540, 2016 | 49 | 2016 |
| HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data A Wirawan, RS Harris, Y Liu, B Schmidt, J Schröder BMC bioinformatics 15 (1), 131, 2014 | 34 | 2014 |
| Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1 Y Zhang, W Wu, Y Cheng, DC King, RS Harris, J Taylor, F Chiaromonte, ... Nucleic acids research 37 (21), 7024-7038, 2009 | 31 | 2009 |
| Allsome sequence bloom trees C Sun, RS Harris, R Chikhi, P Medvedev Journal of Computational Biology 25 (5), 467-479, 2018 | 29 | 2018 |
| Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate WM Guiblet, MA Cremona, M Cechova, RS Harris, I Kejnovska, ... Genome research 28 (12), 1767-1778, 2018 | 8* | 2018 |
| HomologMiner: looking for homologous genomic groups in whole genomes M Hou, P Berman, CH Hsu, RS Harris Bioinformatics 23 (8), 917-925, 2007 | 7 | 2007 |
| RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assembly S Rangavittal, RS Harris, M Cechova, M Tomaszkiewicz, R Chikhi, ... Bioinformatics 34 (7), 1125-1131, 2017 | 6 | 2017 |
| Noise-Cancelling Repeat Finder: Uncovering tandem repeats in error-prone long-read sequencing data KD Harris, R.S., Cechova, M., Makova Bioinformatics, 2019 | 3* | 2019 |
| Noise-Cancelling Repeat Finder: Uncovering tandem repeats in error-prone long-read sequencing data RS Harris, M Cechova, K Makova bioRxiv, 475194, 2018 | 3 | 2018 |
