Robert S Harris
Robert S Harris
Assistant Research Professor, Pennsylvania State University
Verified email at
Cited by
Cited by
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution.
International Chicken Genome Sequencing Consortium
Nature 432 (7018), 695-716, 2004
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
Improved pairwise alignment of genomic DNA
RS Harris
The Pennsylvania State University, 2007
Genome analysis of the platypus reveals unique signatures of evolution
WC Warren, LDW Hillier, JAM Graves, E Birney, CP Ponting, F Grützner, ...
Nature 453 (7192), 175, 2008
Comparative and demographic analysis of orang-utan genomes
DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ...
Nature 469 (7331), 529-533, 2011
Integrative annotation of chromatin elements from ENCODE data
MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ...
Nucleic acids research 41 (2), 827-841, 2013
Complete Khoisan and Bantu genomes from southern Africa
SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ...
Nature 463 (7283), 943-947, 2010
28-way vertebrate alignment and conservation track in the UCSC Genome Browser
W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ...
Genome research 17 (12), 1797-1808, 2007
Towards complete and error-free genome assemblies of all vertebrate species
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...
Nature 592 (7856), 737-746, 2021
Alignathon: a competitive assessment of whole-genome alignment methods
D Earl, N Nguyen, G Hickey, RS Harris, S Fitzgerald, K Beal, I Seledtsov, ...
Genome research 24 (12), 2077-2089, 2014
A time-and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y
M Tomaszkiewicz, S Rangavittal, M Cechova, RC Sanchez, ...
Genome research 26 (4), 530-540, 2016
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications
A Fungtammasan, G Ananda, SE Hile, MSW Su, C Sun, R Harris, ...
Genome research 25 (5), 736-749, 2015
An integrated encyclopedia of DNA elements in the human genome. vol. 489
I Dunham, A Kundaje, SF Aldred, PJ Collins, CA Davis, F Doyle, ...
Nature, 57-74, 2012
Progressive Cactus is a multiple-genome aligner for the thousand-genome era
J Armstrong, G Hickey, M Diekhans, IT Fiddes, AM Novak, A Deran, ...
Nature 587 (7833), 246-251, 2020
Allsome sequence bloom trees
C Sun, RS Harris, R Chikhi, P Medvedev
International Conference on Research in Computational Molecular Biology, 272-286, 2017
HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data
A Wirawan, RS Harris, Y Liu, B Schmidt, J Schröder
BMC bioinformatics 15 (1), 1-13, 2014
Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1
Y Zhang, W Wu, Y Cheng, DC King, RS Harris, J Taylor, F Chiaromonte, ...
Nucleic acids research 37 (21), 7024-7038, 2009
Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate
WM Guiblet, MA Cremona, M Cechova, RS Harris, I Kejnovska, ...
Genome research 28 (12), 1767-1778, 2018
Noise-cancelling repeat finder: uncovering tandem repeats in error-prone long-read sequencing data
RS Harris, M Cechova, KD Makova
Bioinformatics 35 (22), 4809-4811, 2019
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