John Eppley
John Eppley
Simons Collaboration on Ocean Processes and Ecology, University of Hawaiʻi at Mānoa
Verified email at hawaii.edu - Homepage
Title
Cited by
Cited by
Year
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean
Y Shi, GW Tyson, JM Eppley, EF DeLong
The ISME journal 5 (6), 999-1013, 2010
2132010
Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages
EA Ottesen, CR Young, SM Gifford, JM Eppley, R Marin, SC Schuster, ...
Science 345 (6193), 207-212, 2014
1782014
Pattern and synchrony of gene expression among sympatric marine microbial populations
EA Ottesen, CR Young, JM Eppley, JP Ryan, FP Chavez, CA Scholin, ...
Proceedings of the National Academy of Sciences 110 (6), E488-E497, 2013
1572013
Microbial community transcriptional networks are conserved in three domains at ocean basin scales
FO Aylward, JM Eppley, JM Smith, FP Chavez, CA Scholin, EF DeLong
Proceedings of the National Academy of Sciences 112 (17), 5443-5448, 2015
1432015
Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean
SA Lincoln, B Wai, JM Eppley, MJ Church, RE Summons, EF DeLong
Proceedings of the National Academy of Sciences 111 (27), 9858-9863, 2014
1232014
Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre
KM Fontanez, JM Eppley, TJ Samo, DM Karl, EF DeLong
Frontiers in Microbiology 6, 469, 2015
962015
Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone
JA Bryant, FJ Stewart, JM Eppley, EF DeLong
Ecology 93 (7), 1659-1673, 2012
912012
Genetic exchange across a species boundary in the archaeal genus Ferroplasma
JM Eppley, GW Tyson, WM Getz, JF Banfield
Genetics 177 (1), 407-416, 2007
782007
Environmental drivers of a microbial genomic transition zone in the ocean’s interior
DR Mende, JA Bryant, FO Aylward, JM Eppley, T Nielsen, DM Karl, ...
Nature Microbiology, 1, 2017
762017
Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities
FJ Stewart, AK Sharma, JA Bryant, JM Eppley, EF DeLong
Genome Biology 12 (3), 1-24, 2011
672011
Diel cycling and long-term persistence of viruses in the ocean’s euphotic zone
FO Aylward, D Boeuf, DR Mende, EM Wood-Charlson, A Vislova, ...
Proceedings of the National Academy of Sciences 114 (43), 11446-11451, 2017
602017
Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera
ST Wilson, FO Aylward, F Ribalet, B Barone, JR Casey, PE Connell, ...
Nature microbiology 2 (9), 1-9, 2017
592017
Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre
JA Bryant, FO Aylward, JM Eppley, DM Karl, MJ Church, EF DeLong
The ISME journal 10 (6), 1308-1322, 2016
522016
Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean
D Boeuf, BR Edwards, JM Eppley, SK Hu, KE Poff, AE Romano, DA Caron, ...
Proceedings of the National Academy of Sciences 116 (24), 11824-11832, 2019
442019
Strainer: software for analysis of population variation in community genomic datasets
JM Eppley, GW Tyson, WM Getz, JF Banfield
BMC bioinformatics 8 (1), 1-11, 2007
392007
Time‐series analyses of Monterey Bay coastal microbial picoplankton using a ‘genome proxy’microarray
VI Rich, VD Pham, J Eppley, Y Shi, EF DeLong
Environmental Microbiology 13 (1), 116-134, 2011
352011
Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities
J Beaulaurier, E Luo, JM Eppley, P Den Uyl, X Dai, A Burger, DJ Turner, ...
Genome Research 30 (3), 437-446, 2020
262020
Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria
J Grote, C Bayindirli, K Bergauer, PC de Moraes, H Chen, L D’Ambrosio, ...
Standards in Genomic Sciences 5 (3), 269, 2011
262011
Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually …
BP Durham, J Grote, KA Whittaker, SJ Bender, H Luo, SL Grim, JM Brown, ...
Standards in genomic sciences 9 (3), 632, 2014
252014
Improved environmental genomes via integration of metagenomic and single-cell assemblies
DR Mende, FO Aylward, JM Eppley, TN Nielsen, EF DeLong
Frontiers in microbiology 7, 143, 2016
212016
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