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Ivan G. Costa
Ivan G. Costa
Professor, Institute of Computational Genomics, RWTH Aachen
Verified email at rwth-aachen.de - Homepage
Title
Cited by
Cited by
Year
Clustering cancer gene expression data: a comparative study
MC De Souto, IG Costa, DS De Araujo, TB Ludermir, A Schliep
BMC bioinformatics 9 (1), 1-14, 2008
4752008
Therapeutic inhibition of inflammatory monocyte recruitment reduces steatohepatitis and liver fibrosis
O Krenkel, T Puengel, O Govaere, AT Abdallah, JC Mossanen, ...
Hepatology 67 (4), 1270-1283, 2018
3342018
SARS-CoV-2 infects and replicates in cells of the human endocrine and exocrine pancreas
JA Müller, R Groß, C Conzelmann, J Krüger, U Merle, J Steinhart, T Weil, ...
Nature Metabolism 3 (2), 149-165, 2021
3192021
Identification of transcription factor binding sites using ATAC-seq
Z Li, MH Schulz, T Look, M Begemann, M Zenke, IG Costa
Genome biology 20 (1), 1-21, 2019
2482019
On the selection of appropriate distances for gene expression data clustering
PA Jaskowiak, RJGB Campello, IG Costa
BMC bioinformatics 15 (2), 1-17, 2014
1802014
A multiple kernel learning algorithm for drug-target interaction prediction
ACA Nascimento, RBC Prudêncio, IG Costa
BMC bioinformatics 17 (1), 1-16, 2016
1702016
Human pluripotent stem cell-derived acinar/ductal organoids generate human pancreas upon orthotopic transplantation and allow disease modelling
M Hohwieler, A Illing, PC Hermann, T Mayer, M Stockmann, L Perkhofer, ...
Gut 66 (3), 473-486, 2017
1682017
Analysis of computational footprinting methods for DNase sequencing experiments
EG Gusmao, M Allhoff, M Zenke, IG Costa
Nature methods 13 (4), 303-309, 2016
1362016
DNA methylation levels at individual age-associated CpG sites can be indicative for life expectancy
Q Lin, CI Weidner, IG Costa, RE Marioni, MRP Ferreira, IJ Deary, ...
Aging (Albany NY) 8 (2), 394, 2016
1362016
HMGB2 loss upon senescence entry disrupts genomic organization and induces CTCF clustering across cell types
A Zirkel, M Nikolic, K Sofiadis, JP Mallm, CA Brackley, H Gothe, ...
Molecular cell 70 (4), 730-744. e6, 2018
1332018
The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation
M Kalwa, S Hänzelmann, S Otto, CC Kuo, J Franzen, S Joussen, ...
Nucleic acids research 44 (22), 10631-10643, 2016
1242016
Surface topography guides morphology and spatial patterning of induced pluripotent stem cell colonies
G Abagnale, A Sechi, M Steger, Q Zhou, CC Kuo, G Aydin, C Schalla, ...
Stem cell reports 9 (2), 654-666, 2017
1212017
Impact of missing data imputation methods on gene expression clustering and classification
MCP De Souto, PA Jaskowiak, IG Costa
BMC bioinformatics 16 (1), 1-9, 2015
1142015
Deep learning-based clustering approaches for bioinformatics
MR Karim, O Beyan, A Zappa, IG Costa, D Rebholz-Schuhmann, ...
Briefings in Bioinformatics 22 (1), 393-415, 2021
1062021
Myeloid cells in liver and bone marrow acquire a functionally distinct inflammatory phenotype during obesity-related steatohepatitis
O Krenkel, J Hundertmark, AT Abdallah, M Kohlhepp, T Puengel, T Roth, ...
Gut 69 (3), 551-563, 2020
1052020
CLEVER: clique-enumerating variant finder
T Marschall, IG Costa, S Canzar, M Bauer, GW Klau, A Schliep, ...
Bioinformatics 28 (22), 2875-2882, 2012
1042012
Ranking and selecting clustering algorithms using a meta-learning approach
MCP De Souto, RBC Prudencio, RGF Soares, DSA De Araujo, IG Costa, ...
2008 IEEE International Joint Conference on Neural Networks (IEEE World …, 2008
1032008
Detection of RNA–DNA binding sites in long noncoding RNAs
CC Kuo, S Hänzelmann, N Sentürk Cetin, S Frank, B Zajzon, JP Derks, ...
Nucleic acids research 47 (6), e32-e32, 2019
1022019
Epigenetic age predictions based on buccal swabs are more precise in combination with cell type-specific DNA methylation signatures
M Eipel, F Mayer, T Arent, MRP Ferreira, C Birkhofer, U Gerstenmaier, ...
Aging (Albany NY) 8 (5), 1034, 2016
992016
Analyzing gene expression time-courses
A Schliep, IG Costa, C Steinhoff, A Schonhuth
IEEE/ACM Transactions on computational biology and bioinformatics 2 (3), 179-193, 2005
982005
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