Juuso Parkkinen
Juuso Parkkinen
Researcher at Helsinki Institute for Information Technology HIIT, Aalto University
Adresse e-mail validée de aalto.fi - Page d'accueil
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A community computational challenge to predict the activity of pairs of compounds
M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ...
Nature biotechnology 32 (12), 1213-1222, 2014
1832014
A transcriptomics data-driven gene space accurately predicts liver cytopathology and drug-induced liver injury
P Kohonen, JA Parkkinen, EL Willighagen, R Ceder, K Wennerberg, ...
Nature communications 8 (1), 1-15, 2017
522017
Probabilistic drug connectivity mapping
JA Parkkinen, S Kaski
BMC bioinformatics 15 (1), 113, 2014
332014
A block model suitable for sparse graphs
J Parkkinen, J Sinkkonen, A Gyenge, S Kaski
Proceedings of the 7th International Workshop on Mining and Learning with …, 2009
302009
Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs
SA Khan, A Faisal, JP Mpindi, JA Parkkinen, T Kalliokoski, A Poso, ...
BMC bioinformatics 13 (1), 112, 2012
282012
Searching for functional gene modules with interaction component models
JA Parkkinen, S Kaski
BMC Systems Biology 4 (1), 4, 2010
272010
Cross-organism toxicogenomics with group factor analysis
T Suvitaival, JA Parkkinen, S Virtanen, S Kaski
Systems Biomedicine 2 (4), 71-80, 2014
72014
A simple infinite topic mixture for rich graphs and relational data
J Sinkkonen, J Parkkinen, J Aukia, S Kaski
Proc. NIPS Workshop on Analyzing Graphs: Theory and Applications, 2008
72008
Graph visualization with latent variable models
J Parkkinen, K Nybo, J Peltonen, S Kaski
Proceedings of the Eighth Workshop on Mining and Learning with Graphs, 94-101, 2010
52010
In vitro toxicogenomics for toxicity prediction
R GRAFSTRÖM, P Kohonen, J PARKKINEN, S Kaski
12017
PhD Thesis: Probabilistic components of molecular interactions and drug responses
J Parkkinen
Aalto University, 2014
12014
Probabilistic toxicogenomics studies in vitro
J Parkkinen, R Ceder, E Willighagen, K Wennerberg, S Kaski, ...
Toxicology Letters 211, S195, 2012
12012
In vitro toxicogenomics for toxicity prediction using probabilistic component modeling and a compound-induced transcriptional response pattern
R Grafstrom, P Kohonen, J Parkkinen, S Kaski
US Patent 10,665,323, 2020
2020
Package ‘sorvi’
L Lahti, J Parkkinen, J Lehtomaki, J Haapanen, J Paananen, E Happonen, ...
2015
Leo Lahti1, 2, Olli-Pekka Huovilainen1, António Gusmao1 and Juuso Parkkinen1 (1) Dpt. Information and Computer Science, Aalto University, Finland (2) Wageningen University …
A Gusmao, J Parkkinen
2014
Leo Lahti1, 2, Olli-Pekka Huovilainen1, António Gusmao1 and Juuso Parkkinen1 (1) Dpt. Information and Computer Science, Aalto University, Finland (2) Wageningen University …
A Gusmao, J Parkkinen
2014
Leo Lahti1, 2, Olli-Pekka Huovilainen1, António Gusmao1 and Juuso Parkkinen1 (1) Dpt. Information and Computer Science, Aalto University, Finland (2) Wageningen University …
A Gusmao, J Parkkinen
2013
NetResponse: functional network analysis
L Lahti, OP Huovilainen, A Gusmao, J Parkkinen
2013
Cross-organism prediction of drug hepatotoxicity by sparse group factor analysis
T Suvitaival, JA Parkkinen, S Virtanen, S Kaski
12th Annual International Conference on Critical Assessment of Massive Data …, 2013
2013
Leo Lahti1, 2, Olli-Pekka Huovilainen1, António Gusmao1 and Juuso Parkkinen1 (1) Dpt. Information and Computer Science, Aalto University, Finland (2) Wageningen University …
A Gusmao, J Parkkinen
2012
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