| Derivation of trophoblast stem cells from naïve human pluripotent stem cells C Dong, M Beltcheva, P Gontarz, B Zhang, P Popli, LA Fischer, SA Khan, ... elife 9, e52504, 2020 | 229 | 2020 |
| The Reissner fiber is highly dynamic in vivo and controls morphogenesis of the spine BR Troutwine, P Gontarz, MJ Konjikusic, R Minowa, A Monstad-Rios, ... Current Biology 30 (12), 2353-2362. e3, 2020 | 58 | 2020 |
| Kdm6b regulates context-dependent hematopoietic stem cell self-renewal and leukemogenesis C Mallaney, EL Ostrander, H Celik, AC Kramer, A Martens, A Kothari, ... Leukemia 33 (10), 2506-2521, 2019 | 57 | 2019 |
| Tissue-specific usage of transposable element-derived promoters in mouse development B Miao, S Fu, C Lyu, P Gontarz, T Wang, B Zhang Genome biology 21, 1-25, 2020 | 56 | 2020 |
| Deconstructing stepwise fate conversion of human fibroblasts to neurons by microRNAs K Cates, MJ McCoy, JS Kwon, Y Liu, DG Abernathy, B Zhang, S Liu, ... Cell Stem Cell 28 (1), 127-140. e9, 2021 | 48 | 2021 |
| Regulatory networks specifying cortical interneurons from human embryonic stem cells reveal roles for CHD2 in interneuron development K Meganathan, EMA Lewis, P Gontarz, S Liu, EG Stanley, AG Elefanty, ... Proceedings of the National Academy of Sciences 114 (52), E11180-E11189, 2017 | 44 | 2017 |
| Transcriptional profiling of intramembranous and endochondral ossification after fracture in mice BA Coates, JA McKenzie, EG Buettmann, X Liu, PM Gontarz, B Zhang, ... Bone 127, 577-591, 2019 | 38 | 2019 |
| Comparison of differential accessibility analysis strategies for ATAC-seq data P Gontarz, S Fu, X Xing, S Liu, B Miao, V Bazylianska, A Sharma, ... Scientific reports 10 (1), 10150, 2020 | 34 | 2020 |
| SRmapper: a fast and sensitive genome-hashing alignment tool PM Gontarz, J Berger, CF Wong Bioinformatics 29 (3), 316-321, 2013 | 28 | 2013 |
| Gon4l regulates notochord boundary formation and cell polarity underlying axis extension by repressing adhesion genes MLK Williams, A Sawada, T Budine, C Yin, P Gontarz, L Solnica-Krezel Nature communications 9 (1), 1319, 2018 | 24 | 2018 |
| OCT4 cooperates with distinct ATP-dependent chromatin remodelers in naïve and primed pluripotent states in human X Huang, K Park, P Gontarz, B Zhang, J Pan, Z McKenzie, LA Fischer, ... Nature communications 12 (1), 5123, 2021 | 20 | 2021 |
| Cellular and molecular characterization of multiplex autism in human induced pluripotent stem cell-derived neurons EMA Lewis, K Meganathan, D Baldridge, P Gontarz, B Zhang, A Bonni, ... Molecular Autism 10, 1-23, 2019 | 19 | 2019 |
| AIAP: a quality control and integrative analysis package to improve ATAC-seq data analysis S Liu, D Li, C Lyu, PM Gontarz, B Miao, PAF Madden, T Wang, B Zhang Genomics, Proteomics and Bioinformatics 19 (4), 641-651, 2021 | 17 | 2021 |
| The H3K27M mutation alters stem cell growth, epigenetic regulation, and differentiation potential N Kfoury-Beaumont, R Prakasam, S Pondugula, JS Lagas, S Matkovich, ... BMC biology 20 (1), 124, 2022 | 13 | 2022 |
| Txnip Enhances Fitness of Dnmt3a-Mutant Hematopoietic Stem Cells via p21 CR Zhang, EL Ostrander, O Kukhar, C Mallaney, J Sun, E Haussler, ... Blood cancer discovery 3 (3), 220-239, 2022 | 11 | 2022 |
| Transcriptomic analysis of bone and fibrous tissue morphogenesis during digit tip regeneration in the adult mouse F Qu, IC Palte, PM Gontarz, B Zhang, F Guilak FASEB journal: official publication of the Federation of American Societies …, 2020 | 11 | 2020 |
| Altered neuronal physiology, development, and function associated with a common chromosome 15 duplication involving CHRNA7 K Meganathan, R Prakasam, D Baldridge, P Gontarz, B Zhang, F Urano, ... BMC biology 19, 1-26, 2021 | 10 | 2021 |
| FeatSNP: an interactive database for brain-specific epigenetic annotation of human SNPs C Ma, P Madden, P Gontarz, T Wang, B Zhang Frontiers in Genetics 10, 437522, 2019 | 8 | 2019 |
| Improving ATAC-seq data analysis with AIAP, a quality control and integrative analysis package S Liu, D Li, C Lyu, P Gontarz, B Miao, P Madden, T Wang, B Zhang BioRxiv, 686808, 2019 | 5 | 2019 |
| A genetic screen for regulators of muscle morphogenesis in Drosophila T Ou, G Huang, B Wilson, P Gontarz, JB Skeath, AN Johnson G3 11 (8), jkab172, 2021 | 4 | 2021 |
