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Sriram P Chockalingam
Sriram P Chockalingam
Research Scientist II
Verified email at gatech.edu - Homepage
Title
Cited by
Cited by
Year
A survey of error-correction methods for next-generation sequencing
X Yang, SP Chockalingam, S Aluru
Briefings in bioinformatics 14 (1), 56-66, 2013
3112013
A greedy alignment-free distance estimator for phylogenetic inference
SV Thankachan, SP Chockalingam, Y Liu, A Krishnan, S Aluru
BMC bioinformatics 18 (8), 1-8, 2017
402017
ALFRED: a practical method for alignment-free distance computation
SV Thankachan, SP Chockalingam, Y Liu, A Apostolico, S Aluru
Journal of Computational Biology 23 (6), 452-460, 2016
302016
Algorithmic framework for approximate matching under bounded edits with applications to sequence analysis
SV Thankachan, C Aluru, SP Chockalingam, S Aluru
International Conference on Research in Computational Molecular Biology, 211-224, 2018
252018
Parallel bayesian network structure learning for genome-scale gene networks
S Misra, M Vasimuddin, K Pamnany, SP Chockalingam, Y Dong, M Xie, ...
SC'14: Proceedings of the International Conference for High Performance …, 2014
192014
A parallel algorithm for spectrum-based short read error correction
AR Shah, S Chockalingam, S Aluru
2012 IEEE 26th International Parallel and Distributed Processing Symposium …, 2012
172012
Efficient detection of viral transmissions with next-generation sequencing data
I Rytsareva, DS Campo, Y Zheng, S Sims, SV Thankachan, C Tetik, ...
BMC genomics 18 (4), 1-7, 2017
132017
Microarray data processing techniques for genome-scale network inference from large public repositories
S Chockalingam, M Aluru, S Aluru
Microarrays 5 (3), 23, 2016
82016
A parallel framework for constraint-based bayesian network learning via markov blanket discovery
A Srivastava, SP Chockalingam, S Aluru
SC20: International Conference for High Performance Computing, Networking …, 2020
72020
Parallel read error correction for big genomic datasets
N Jammula, S Chockalingam, S Aluru
2015 IEEE 22nd International Conference on High Performance Computing (HiPC …, 2015
62015
A parallel algorithm for Bayesian network inference using arithmetic circuits
M Vasimuddin, SP Chockalingam, S Aluru
2018 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2018
52018
Distributed memory partitioning of high-throughput sequencing datasets for enabling parallel genomics analyses
N Jammula, SP Chockalingam, S Aluru
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
52017
An efficient algorithm for finding all pairs k-mismatch maximal common substrings
SV Thankachan, SP Chockalingam, S Aluru
International Symposium on Bioinformatics Research and Applications, 3-14, 2016
52016
EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networks
M Aluru, H Shrivastava, SP Chockalingam, S Shivakumar, S Aluru
Bioinformatics 38 (5), 1312-1319, 2022
42022
Efficient detection of viral transmission with threshold-based methods
I Rytsareva, DS Campo, Y Zheng, S Sims, C Tetik, J Chirag, ...
2015 IEEE 5th International Conference on Computational Advances in Bio and …, 2015
42015
Reverse engineering gene networks: a comparative study at genome-scale
SP Chockalingam, M Aluru, H Guo, Y Yin, S Aluru
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
32017
Information theory based genome-scale gene networks construction using mapreduce
SP Chockalingam, M Aluru, S Aluru
2015 IEEE 22nd International Conference on High Performance Computing (HiPC …, 2015
32015
A Parallel Algorithm for Finding All Pairs κ-Mismatch Maximal Common Substrings
SP Chockalingam, SV Thankachan, S Aluru
SC'16: Proceedings of the International Conference for High Performance …, 2016
22016
Parallel construction of module networks
A Srivastava, SP Chockalingam, M Aluru, S Aluru
Proceedings of the International Conference for High Performance Computing …, 2021
12021
An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction
SP Chockalingam, J Pannu, S Hooshmand, SV Thankachan, S Aluru
BMC bioinformatics 21 (6), 1-12, 2020
12020
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