| Endoplasmic reticulum transport of glutathione by Sec61 is regulated by Ero1 and Bip AJ Ponsero, A Igbaria, MA Darch, S Miled, CE Outten, JR Winther, ... Molecular cell 67 (6), 962-973. e5, 2017 | 102 | 2017 |
| The dynamic wound microbiome C Liu, AJ Ponsero, DG Armstrong, BA Lipsky, BL Hurwitz BMC medicine 18 (1), 1-12, 2020 | 48 | 2020 |
| Reexamining the function of glutathione in oxidative protein folding and secretion A Delaunay-Moisan, A Ponsero, MB Toledano Antioxidants & redox signaling 27 (15), 1178-1199, 2017 | 42 | 2017 |
| Phage hunters: Computational strategies for finding phages in large-scale ‘omics datasets BL Hurwitz, A Ponsero, J Thornton Jr, JM U’Ren Virus research 244, 110-115, 2018 | 41 | 2018 |
| High abundances of cyanomyoviruses in marine ecosystems demonstrate ecological relevance AR Matteson, JM Rowe, AJ Ponsero, TM Pimentel, PW Boyd, SW Wilhelm FEMS microbiology ecology 84 (2), 223-234, 2013 | 41 | 2013 |
| The promises and pitfalls of machine learning for detecting viruses in aquatic metagenomes AJ Ponsero, BL Hurwitz Frontiers in microbiology 10, 440805, 2019 | 39 | 2019 |
| Libra: scalable k-mer–based tool for massive all-vs-all metagenome comparisons I Choi, AJ Ponsero, M Bomhoff, K Youens-Clark, JH Hartman, BL Hurwitz GigaScience 8 (2), giy165, 2019 | 33 | 2019 |
| iMicrobe: Tools and data-driven discovery platform for the microbiome sciences K Youens-Clark, M Bomhoff, AJ Ponsero, EM Wood-Charlson, J Lynch, ... GigaScience 8 (7), giz083, 2019 | 27 | 2019 |
| Planet Microbe: a platform for marine microbiology to discover and analyze interconnected ‘omics and environmental data AJ Ponsero, M Bomhoff, K Blumberg, K Youens-Clark, NM Herz, ... Nucleic acids research 49 (D1), D792-D802, 2021 | 18 | 2021 |
| Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity GS Watts, JE Thornton Jr, K Youens-Clark, AJ Ponsero, MJ Slepian, ... PLoS computational biology 15 (11), e1006863, 2019 | 17 | 2019 |
| Complete genome sequence of cyanobacterial siphovirus KBS2A AJ Ponsero, F Chen, JT Lennon, SW Wilhelm Genome Announcements 1 (4), e00472-13, 2013 | 15 | 2013 |
| NCBI’s virus discovery Hackathon: Engaging research communities to identify cloud infrastructure requirements R Connor, R Brister, JP Buchmann, W Deboutte, R Edwards, ... Genes 10 (9), 714, 2019 | 13 | 2019 |
| Evaluation of Computational Phage Detection Tools for Metagenomic Datasets KE Schackart, JB Graham, AJ Ponsero, B Hurwitz Frontiers in Microbiology 14, 119, 2022 | 12 | 2022 |
| Molecular response to nitrogen starvation by Frankia alni ACN14a revealed by transcriptomics and functional analysis with a fosmid library in Escherichia coli T Lurthy, N Alloisio, P Fournier, S Anchisi, A Ponsero, P Normand, P Pujic, ... Research in microbiology 169 (2), 90-100, 2018 | 11 | 2018 |
| Bacteroides Abundance Drives Birth-mode Dependent Infant Gut Microbiota Developmental Trajectories D Matharu, AJ Ponsero, E Dikareva, K Korpela, KL Kolho, WM de Vos, ... Frontiers in Microbiology, 3791, 2022 | 10 | 2022 |
| Les herbiers du massif armoricain: un patrimoine scientifique en péril? Etude de cas sur l’herbier «moreau» de l’Université de Brest J Sawtschuk, A Ponsero, E ANDRE-ORMOD ERICA, Bulletin de botanique armoricaine 22, 101-110, 2009 | 5 | 2009 |
| An extended catalogue of integrated prophages in the infant and adult fecal microbiome shows high prevalence of lysogeny E Dikareva, D Matharu, E Lahtinen, KL Kolho, WM De Vos, A Salonen, ... Frontiers in Microbiology 14, 1254535, 2023 | 4 | 2023 |
| Ontology-Enriched Specifications Enabling Findable, Accessible, Interoperable, and Reusable Marine Metagenomic Datasets in Cyberinfrastructure Systems KL Blumberg, AJ Ponsero, M Bomhoff, EM Wood-Charlson, EF DeLong, ... Frontiers in Microbiology 12, 765268, 2021 | 3 | 2021 |
| Cyanolichen microbiome contains novel viruses that encode genes to promote microbial metabolism AJ Ponsero, BL Hurwitz, N Magain, J Miadlikowska, F Lutzoni, JM U’Ren ISME Communications 1 (1), 1-4, 2021 | 3 | 2021 |
| Sources of gut microbiota variation in a large longitudinal Finnish infant cohort R Jokela, AJ Ponsero, E Dikareva, X Wei, KL Kolho, K Korpela, ... EBioMedicine 94, 2023 | 1 | 2023 |
