| The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication W Zhuang, H Chen, M Yang, J Wang, MK Pandey, C Zhang, WC Chang, ... Nature genetics 51 (5), 865-876, 2019 | 435 | 2019 |
| PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants CN Chow, HQ Zheng, NY Wu, CH Chien, HD Huang, TY Lee, ... Nucleic acids research 44 (D1), D1154-D1160, 2016 | 368 | 2016 |
| PlantPAN3. 0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants CN Chow, TY Lee, YC Hung, GZ Li, KC Tseng, YH Liu, PL Kuo, HQ Zheng, ... Nucleic acids research 47 (D1), D1155-D1163, 2019 | 359 | 2019 |
| PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups WC Chang, TY Lee, HD Huang, HY Huang, RL Pan BMC genomics 9, 1-14, 2008 | 340 | 2008 |
| miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression WC Wang, FM Lin, WC Chang, KY Lin, HD Huang, NS Lin BMC bioinformatics 10, 1-13, 2009 | 226 | 2009 |
| DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications CT Lu, KY Huang, MG Su, TY Lee, NA Bretana, WC Chang, YJ Chen, ... Nucleic acids research 41 (D1), D295-D305, 2013 | 212 | 2013 |
| dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications KY Huang, TY Lee, HJ Kao, CT Ma, CC Lee, TH Lin, WC Chang, ... Nucleic acids research 47 (D1), D298-D308, 2019 | 208 | 2019 |
| Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data CH Chien, YM Sun, WC Chang, PY Chiang-Hsieh, TY Lee, WC Tsai, ... Nucleic acids research 39 (21), 9345-9356, 2011 | 193 | 2011 |
| FMM: a web server for metabolic pathway reconstruction and comparative analysis CH Chou, WC Chang, CM Chiu, CC Huang, HD Huang Nucleic acids research 37 (suppl_2), W129-W134, 2009 | 126 | 2009 |
| Incorporating structural characteristics for identification of protein methylation sites DM Shien, TY Lee, WC Chang, JBK Hsu, JT Horng, PC Hsu, TY Wang, ... Journal of computational chemistry 30 (9), 1532-1543, 2009 | 112 | 2009 |
| Incorporating support vector machine for identifying protein tyrosine sulfation sites WC Chang, TY Lee, DM Shien, JBK Hsu, JT Horng, PC Hsu, TY Wang, ... Journal of computational chemistry 30 (15), 2526-2537, 2009 | 99 | 2009 |
| GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group TY Lee, WC Chang, JBK Hsu, TH Chang, DM Shien BMC genomics 13, 1-12, 2012 | 76 | 2012 |
| RegPhos: a system to explore the protein kinase–substrate phosphorylation network in humans TY Lee, J Bo-Kai Hsu, WC Chang, HD Huang Nucleic acids research 39 (suppl_1), D777-D787, 2011 | 75 | 2011 |
| dbPTM in 2022: an updated database for exploring regulatory networks and functional associations of protein post-translational modifications Z Li, S Li, M Luo, JH Jhong, W Li, L Yao, Y Pang, Z Wang, R Wang, R Ma, ... Nucleic acids research 50 (D1), D471-D479, 2022 | 73 | 2022 |
| N‐Ace: Using solvent accessibility and physicochemical properties to identify protein N‐acetylation sites TY Lee, JBK Hsu, FM Lin, WC Chang, PC Hsu, HD Huang Journal of computational chemistry 31 (15), 2759-2771, 2010 | 65 | 2010 |
| AlgaePath: comprehensive analysis of metabolic pathways using transcript abundance data from next-generation sequencing in green algae HQ Zheng, YF Chiang-Hsieh, CH Chien, BKJ Hsu, TL Liu, CNN Chen, ... BMC genomics 15, 1-12, 2014 | 48 | 2014 |
| A comprehensive resource for integrating and displaying protein post-translational modifications TY Lee, JBK Hsu, WC Chang, TY Wang, PC Hsu, HD Huang BMC research notes 2, 1-9, 2009 | 47 | 2009 |
| Comparative transcriptome analysis reveals a potential photosynthate partitioning mechanism between lipid and starch biosynthetic pathways in green microalgae WC Chang, HQ Zheng, CNN Chen Algal research 16, 54-62, 2016 | 45 | 2016 |
| EXPath: a database of comparative expression analysis inferring metabolic pathways for plants CH Chien, CN Chow, NY Wu, YF Chiang-Hsieh, PF Hou, WC Chang BMC genomics 16, 1-10, 2015 | 45 | 2015 |
| Paddy-upland rotation for sustainable agriculture with regards to diverse soil microbial community PF Hou, CH Chien, YF Chiang-Hsieh, KC Tseng, CN Chow, HJ Huang, ... Scientific Reports 8 (1), 7966, 2018 | 39 | 2018 |
