Daniel Doerr
Title
Cited by
Cited by
Year
Orthology detection combining clustering and synteny for very large datasets
M Lechner, M Hernandez-Rosales, D Doerr, N Wieseke, A Thévenin, ...
PLoS one 9 (8), e105015, 2014
872014
Gene family assignment-free comparative genomics
D Doerr, A Thévenin, J Stoye
BMC bioinformatics 13 (19), 1-10, 2012
212012
Active and repressed biosynthetic gene clusters have spatially distinct chromosome states
HW Nützmann, D Doerr, A Ramírez-Colmenero, JE Sotelo-Fonseca, ...
Proceedings of the National Academy of Sciences 117 (24), 13800-13809, 2020
202020
The potential of family-free genome comparison
MDV Braga, C Chauve, D Doerr, K Jahn, J Stoye, A Thévenin, R Wittler
Models and Algorithms for Genome Evolution, 287-307, 2013
142013
Identifying gene clusters by discovering common intervals in indeterminate strings
D Doerr, J Stoye, S Böcker, K Jahn
BMC genomics 15 (6), 1-12, 2014
112014
Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains
D Doerr, K Hu, S Renly, S Edlund, M Davis, JH Kaufman, J Lessler, ...
Proceedings of the First ACM SIGSPATIAL International Workshop on Use of GIS …, 2012
72012
Computing the rearrangement distance of natural genomes
L Bohnenkämper, MDV Braga, D Doerr, J Stoye
International Conference on Research in Computational Molecular Biology, 3-18, 2020
62020
GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing data
T Schulz, J Stoye, D Doerr
BMC genomics 19 (5), 59-70, 2018
62018
Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants
DP Rubert, FV Martinez, J Stoye, D Doerr
BMC genomics 21 (2), 1-11, 2020
42020
Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes
N Luhmann, D Doerr, C Chauve
Microbial genomics 3 (9), 2017
42017
New Genome Similarity Measures based on Conserved Gene Adjacencies
D Doerr, LAB Kowada, E Araujo, S Deshpande, S Dantas, BME Moret, ...
Journal of Computational Biology 24 (6), 616-634, 2017
42017
New genome similarity measures based on conserved gene adjacencies
LAB Kowada, D Doerr, S Dantas, J Stoye
International Conference on Research in Computational Molecular Biology, 204-224, 2016
4*2016
Gene family-free genome comparison
D Dörr
PhD thesis, Universität Bielefeld, Bielefeld, Germany. 2016. https://pub …, 2015
42015
Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions
D Doerr, I Gronau, S Moran, I Yavneh
Algorithms for Molecular Biology 7 (1), 1-16, 2012
42012
Sequence-based synteny analysis of multiple large genomes
D Doerr, BME Moret
Comparative Genomics, 317-329, 2018
22018
Family-free genome comparison
D Doerr, P Feijão, J Stoye
Comparative Genomics, 331-342, 2018
22018
The gene family-free median of three
D Doerr, M Balaban, P Feijão, C Chauve
Algorithms for Molecular Biology 12 (1), 1-14, 2017
22017
Proactive simulation and detection of outbreaks based on product data
MA Davis, SB Edlund, H Kun, JH Kaufman, SR Renly, D Dörr
US Patent 10,607,174, 2020
12020
A Perspective on Comparative and Functional Genomics
D Doerr, J Stoye
Bioinformatics and Phylogenetics, 361-372, 2019
12019
Small Parsimony for Natural Genomes in the DCJ-Indel Model
D Doerr, C Chauve
arXiv preprint arXiv:2108.04297, 2021
2021
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Articles 1–20