Follow
Daniel Doerr
Title
Cited by
Cited by
Year
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
2752023
Orthology detection combining clustering and synteny for very large datasets
M Lechner, M Hernandez-Rosales, D Doerr, N Wieseke, A Thévenin, ...
PLoS one 9 (8), e105015, 2014
1172014
Active and repressed biosynthetic gene clusters have spatially distinct chromosome states
HW Nützmann, D Doerr, A Ramírez-Colmenero, JE Sotelo-Fonseca, ...
Proceedings of the National Academy of Sciences 117 (24), 13800-13809, 2020
682020
Computing the rearrangement distance of natural genomes
L Bohnenkämper, MDV Braga, D Doerr, J Stoye
International Conference on Research in Computational Molecular Biology, 3-18, 2020
292020
Gene family assignment-free comparative genomics
D Doerr, A Thévenin, J Stoye
BMC bioinformatics 13, 1-10, 2012
232012
The potential of family-free genome comparison
MDV Braga, C Chauve, D Doerr, K Jahn, J Stoye, A Thévenin, R Wittler
Models and Algorithms for Genome Evolution, 287-307, 2013
192013
Identifying gene clusters by discovering common intervals in indeterminate strings
D Doerr, J Stoye, S Böcker, K Jahn
BMC genomics 15, 1-12, 2014
132014
Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains
D Doerr, K Hu, S Renly, S Edlund, M Davis, JH Kaufman, J Lessler, ...
Proceedings of the First ACM SIGSPATIAL International Workshop on Use of GIS …, 2012
122012
Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes
N Luhmann, D Doerr, C Chauve
Microbial genomics 3 (9), 2017
82017
GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing data
T Schulz, J Stoye, D Doerr
BMC genomics 19, 59-70, 2018
72018
Family-free genome comparison
D Doerr, P Feijão, J Stoye
Comparative genomics: methods and protocols, 331-342, 2018
72018
Horizontal Gene Transfer Phylogenetics: A Random Walk Approach
G Sevillya, D Doerr, Y Lerner, J Stoye, M Steel, S Snir
Molecular Biology and Evolution 37 (5), 1470-1479, 2020
62020
Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants
DP Rubert, FV Martinez, J Stoye, D Doerr
BMC genomics 21 (2), 1-11, 2020
62020
The potential of family-free rearrangements towards gene orthology inference
DP Rubert, D Doerr, MDV Braga
Journal of bioinformatics and computational biology 19 (06), 2140014, 2021
52021
Gene family-free genome comparison
D Dörr
PhD thesis, Universität Bielefeld, Bielefeld, Germany. 2016. https://pub …, 2015
52015
Small parsimony for natural genomes in the DCJ-indel model
D Doerr, C Chauve
Journal of Bioinformatics and Computational Biology 19 (06), 2140009, 2021
42021
The gene family-free median of three
D Doerr, M Balaban, P Feijão, C Chauve
Algorithms for Molecular Biology 12 (1), 1-14, 2017
42017
New Genome Similarity Measures based on Conserved Gene Adjacencies
D Doerr, LAB Kowada, E Araujo, S Deshpande, S Dantas, BME Moret, ...
Journal of Computational Biology 24 (6), 616-634, 2017
4*2017
Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions
D Doerr, I Gronau, S Moran, I Yavneh
Algorithms for Molecular Biology 7 (1), 1-16, 2012
42012
Sequence-based synteny analysis of multiple large genomes
D Doerr, BME Moret
Comparative Genomics: Methods and Protocols, 317-329, 2018
32018
The system can't perform the operation now. Try again later.
Articles 1–20