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Andrew Gentles
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Robust enumeration of cell subsets from tissue expression profiles
AM Newman, CL Liu, MR Green, AJ Gentles, W Feng, Y Xu, CD Hoang, ...
Nature methods 12 (5), 453-457, 2015
92992015
The immune landscape of cancer
V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ...
Immunity 48 (4), 812-830. e14, 2018
44902018
The prognostic landscape of genes and infiltrating immune cells across human cancers
AJ Gentles, AM Newman, CL Liu, SV Bratman, W Feng, D Kim, VS Nair, ...
Nature medicine 21 (8), 938-945, 2015
28402015
Determining cell type abundance and expression from bulk tissues with digital cytometry
AM Newman, CB Steen, CL Liu, AJ Gentles, AA Chaudhuri, F Scherer, ...
Nature biotechnology 37 (7), 773-782, 2019
27252019
Machine learning identifies stemness features associated with oncogenic dedifferentiation
TM Malta, A Sokolov, AJ Gentles, T Burzykowski, L Poisson, JN Weinstein, ...
Cell 173 (2), 338-354. e15, 2018
16142018
The CD47-signal regulatory protein alpha (SIRPa) interaction is a therapeutic target for human solid tumors
SB Willingham, JP Volkmer, AJ Gentles, D Sahoo, P Dalerba, SS Mitra, ...
Proceedings of the National Academy of Sciences 109 (17), 6662-6667, 2012
16142012
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
O Kohany, AJ Gentles, L Hankus, J Jurka
BMC bioinformatics 7, 1-7, 2006
9242006
Calreticulin is the dominant pro-phagocytic signal on multiple human cancers and is counterbalanced by CD47
MP Chao, S Jaiswal, R Weissman-Tsukamoto, AA Alizadeh, AJ Gentles, ...
Science translational medicine 2 (63), 63ra94-63ra94, 2010
8212010
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ...
Nature 447 (7141), 167-177, 2007
8002007
Association of a leukemic stem cell gene expression signature with clinical outcomes in acute myeloid leukemia
AJ Gentles, SK Plevritis, R Majeti, AA Alizadeh
Jama 304 (24), 2706-2715, 2010
4632010
A simple method for estimating interactions between a treatment and a large number of covariates
L Tian, AA Alizadeh, AJ Gentles, R Tibshirani
Journal of the American Statistical Association 109 (508), 1517-1532, 2014
4392014
Transient rest restores functionality in exhausted CAR-T cells through epigenetic remodeling
EW Weber, KR Parker, E Sotillo, RC Lynn, H Anbunathan, J Lattin, ...
Science 372 (6537), eaba1786, 2021
3742021
Mutations in early follicular lymphoma progenitors are associated with suppressed antigen presentation
MR Green, S Kihira, CL Liu, RV Nair, R Salari, AJ Gentles, J Irish, H Stehr, ...
Proceedings of the National Academy of Sciences 112 (10), E1116-E1125, 2015
3672015
Hierarchy in somatic mutations arising during genomic evolution and progression of follicular lymphoma
MR Green, AJ Gentles, RV Nair, JM Irish, S Kihira, CL Liu, I Kela, ...
Blood, The Journal of the American Society of Hematology 121 (9), 1604-1611, 2013
3642013
Prospective separation of normal and leukemic stem cells based on differential expression of TIM3, a human acute myeloid leukemia stem cell marker
M Jan, MP Chao, AC Cha, AA Alizadeh, AJ Gentles, IL Weissman, ...
Proceedings of the National Academy of Sciences 108 (12), 5009-5014, 2011
3202011
Role of KEAP1/NRF2 and TP53 Mutations in Lung Squamous Cell Carcinoma Development and Radiation Resistance
Y Jeong, NT Hoang, A Lovejoy, H Stehr, AM Newman, AJ Gentles, ...
Cancer discovery 7 (1), 86-101, 2017
2812017
Amino acid runs in eukaryotic proteomes and disease associations
S Karlin, L Brocchieri, A Bergman, J Mrázek, AJ Gentles
Proceedings of the National Academy of Sciences 99 (1), 333-338, 2002
2652002
CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities
K Han, SE Pierce, A Li, K Spees, GR Anderson, JA Seoane, YH Lo, ...
Nature 580 (7801), 136-141, 2020
2362020
Prediction of survival in diffuse large B-cell lymphoma based on the expression of 2 genes reflecting tumor and microenvironment
AA Alizadeh, AJ Gentles, AJ Alencar, CL Liu, HE Kohrt, R Houot, ...
Blood, The Journal of the American Society of Hematology 118 (5), 1350-1358, 2011
2072011
Genome-scale compositional comparisons in eukaryotes
AJ Gentles, S Karlin
Genome research 11 (4), 540-546, 2001
2022001
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Articles 1–20