David A Rasmussen
Title
Cited by
Cited by
Year
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
5922019
Inference for nonlinear epidemiological models using genealogies and time series
DA Rasmussen, O Ratmann, K Koelle
PLoS Comput Biol 7 (8), e1002136, 2011
1582011
Sunflower domestication alleles support single domestication center in eastern North America
BK Blackman, M Scascitelli, NC Kane, HH Luton, DA Rasmussen, RA Bye, ...
Proceedings of the National Academy of Sciences 108 (34), 14360-14365, 2011
1122011
Phylodynamic inference for structured epidemiological models
DA Rasmussen, EM Volz, K Koelle
PLoS Comput Biol 10 (4), e1003570, 2014
912014
One size fits all? Molecular evidence for a commonly inherited petal identity program in Ranunculales
DA Rasmussen, EM Kramer, EA Zimmer
American Journal of Botany 96 (1), 96-109, 2009
862009
Contributions of flowering time genes to sunflower domestication and improvement
BK Blackman, DA Rasmussen, JL Strasburg, AR Raduski, JM Burke, ...
Genetics 187 (1), 271-287, 2011
842011
Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data
T Stadler, D Kühnert, DA Rasmussen, L du Plessis
PLoS currents 6, 2014
802014
What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)
DA Rasmussen, MAF Noor
Bmc Genomics 10 (1), 1-9, 2009
712009
Phylogenetic tools for generalized HIV-1 epidemics: findings from the PANGEA-HIV methods comparison
O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, ...
Molecular biology and evolution 34 (1), 185-203, 2017
542017
Reconciling phylodynamics with epidemiology: the case of dengue virus in southern Vietnam
DA Rasmussen, MF Boni, K Koelle
Molecular biology and evolution 31 (2), 258-271, 2014
532014
The effects of a deleterious mutation load on patterns of influenza A/H3N2's antigenic evolution in humans
K Koelle, DA Rasmussen
Elife 4, e07361, 2015
482015
The structured coalescent and its approximations
NF Müller, DA Rasmussen, T Stadler
Molecular biology and evolution 34 (11), 2970-2981, 2017
452017
Rates of coalescence for common epidemiological models at equilibrium
K Koelle, DA Rasmussen
Journal of the Royal Society Interface 9 (70), 997-1007, 2012
402012
Taming the BEAST—A community teaching material resource for BEAST 2
J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ...
Systematic biology 67 (1), 170-174, 2018
392018
MASCOT: parameter and state inference under the marginal structured coalescent approximation
NF Müller, D Rasmussen, T Stadler
Bioinformatics 34 (22), 3843-3848, 2018
342018
Origin, imports and exports of HIV-1 subtype C in South Africa: A historical perspective
E Wilkinson, D Rasmussen, O Ratmann, T Stadler, S Engelbrecht, ...
Infection, Genetics and Evolution 46, 200-208, 2016
252016
Phylodynamics on local sexual contact networks
DA Rasmussen, R Kouyos, HF Günthard, T Stadler
PLoS computational biology 13 (3), e1005448, 2017
192017
Estimating epidemic incidence and prevalence from genomic data
TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, ...
Molecular biology and evolution 36 (8), 1804-1816, 2019
172019
A dimensionless number for understanding the evolutionary dynamics of antigenically variable RNA viruses
K Koelle, O Ratmann, DA Rasmussen, V Pasour, J Mattingly
Proceedings of the Royal Society B: Biological Sciences 278 (1725), 3723-3730, 2011
152011
Tracking external introductions of HIV using phylodynamics reveals a major source of infections in rural KwaZulu-Natal, South Africa
DA Rasmussen, E Wilkinson, A Vandormael, F Tanser, D Pillay, T Stadler, ...
Virus evolution 4 (2), vey037, 2018
102018
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Articles 1–20