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Alex Reynolds
Alex Reynolds
Altius Institute for Biosciences
Verified email at altius.org
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
137742012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
59272015
Systematic localization of common disease-associated variation in regulatory DNA
MT Maurano, R Humbert, E Rynes, RE Thurman, E Haugen, H Wang, ...
Science 337 (6099), 1190-1195, 2012
37802012
The accessible chromatin landscape of the human genome
RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ...
Nature 489 (7414), 75-82, 2012
30322012
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
18882014
An expansive human regulatory lexicon encoded in transcription factor footprints
S Neph, J Vierstra, AB Stergachis, AP Reynolds, E Haugen, B Vernot, ...
Nature 489 (7414), 83-90, 2012
9452012
BEDOPS: high-performance genomic feature operations
S Neph, MS Kuehn, AP Reynolds, E Haugen, RE Thurman, AK Johnson, ...
Bioinformatics 28 (14), 1919-1920, 2012
8772012
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
7892018
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
JR Hesselberth, X Chen, Z Zhang, PJ Sabo, R Sandstrom, AP Reynolds, ...
Nature methods 6 (4), 283-289, 2009
7212009
Cell-of-origin chromatin organization shapes the mutational landscape of cancer
P Polak, R Karlić, A Koren, R Thurman, R Sandstrom, MS Lawrence, ...
Nature 518 (7539), 360-364, 2015
5732015
Circuitry and dynamics of human transcription factor regulatory networks
S Neph, AB Stergachis, A Reynolds, R Sandstrom, E Borenstein, ...
Cell 150 (6), 1274-1286, 2012
5212012
Foxp3 exploits a pre-existent enhancer landscape for regulatory T cell lineage specification
RM Samstein, A Arvey, SZ Josefowicz, X Peng, A Reynolds, R Sandstrom, ...
Cell 151 (1), 153-166, 2012
5012012
Developmental fate and cellular maturity encoded in human regulatory DNA landscapes
AB Stergachis, S Neph, A Reynolds, R Humbert, B Miller, SL Paige, ...
Cell 154 (4), 888-903, 2013
3722013
Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution
A Mayer, J Di Iulio, S Maleri, U Eser, J Vierstra, A Reynolds, R Sandstrom, ...
Cell 161 (3), 541-554, 2015
3672015
Exonic transcription factor binding directs codon choice and affects protein evolution
AB Stergachis, E Haugen, A Shafer, W Fu, B Vernot, A Reynolds, ...
Science 342 (6164), 1367-1372, 2013
3402013
Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana
AM Sullivan, AA Arsovski, J Lempe, KL Bubb, MT Weirauch, PJ Sabo, ...
Cell reports 8 (6), 2015-2030, 2014
2642014
Global reference mapping of human transcription factor footprints
J Vierstra, J Lazar, R Sandstrom, J Halow, K Lee, D Bates, M Diegel, ...
Nature 583 (7818), 729-736, 2020
2502020
Conservation of trans-acting circuitry during mammalian regulatory evolution
AB Stergachis, S Neph, R Sandstrom, E Haugen, AP Reynolds, M Zhang, ...
Nature 515 (7527), 365-370, 2014
2392014
Index and biological spectrum of human DNase I hypersensitive sites
W Meuleman, A Muratov, E Rynes, J Halow, K Lee, D Bates, M Diegel, ...
Nature 584 (7820), 244-251, 2020
2202020
Genome‐scale mapping of DNase I hypersensitivity
S John, PJ Sabo, TK Canfield, K Lee, S Vong, M Weaver, H Wang, ...
Current protocols in molecular biology 103 (1), 21.27. 1-21.27. 20, 2013
1132013
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