| Transmission of SARS-CoV-2 Lineage B. 1.1. 7 in England: Insights from linking epidemiological and genetic data E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ... medRxiv, 2020.12. 30.20249034, 2021 | 189 | 2021 |
| Model criticism based on likelihood-free inference, with an application to protein network evolution O Ratmann, C Andrieu, C Wiuf, S Richardson Proceedings of the National Academy of Sciences 106 (26), 10576-10581, 2009 | 170 | 2009 |
| Inference for nonlinear epidemiological models using genealogies and time series DA Rasmussen, O Ratmann, K Koelle PLoS Comput Biol 7 (8), e1002136, 2011 | 158 | 2011 |
| Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum O Ratmann, O Jørgensen, T Hinkley, M Stumpf, S Richardson, C Wiuf PLoS Comput Biol 3 (11), e230, 2007 | 129 | 2007 |
| Sources of HIV infection among men having sex with men and implications for prevention O Ratmann, A Van Sighem, D Bezemer, A Gavryushkina, S Jurriaans, ... Science translational medicine 8 (320), 320ra2-320ra2, 2016 | 100 | 2016 |
| Report 21: Estimating COVID-19 cases and reproduction number in Brazil TA Mellan, HH Hoeltgebaum, S Mishra, C Whittaker, RP Schnekenberg, ... medRxiv, 2020 | 80 | 2020 |
| PHYLOSCANNER: inferring transmission from within-and between-host pathogen genetic diversity C Wymant, M Hall, O Ratmann, D Bonsall, T Golubchik, M de Cesare, ... Molecular biology and evolution 35 (3), 719-733, 2018 | 78 | 2018 |
| Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... medRxiv, 2021 | 66 | 2021 |
| Impact of cross-protective vaccines on epidemiological and evolutionary dynamics of influenza N Arinaminpathy, O Ratmann, K Koelle, SL Epstein, GE Price, C Viboud, ... Proceedings of the National Academy of Sciences 109 (8), 3173-3177, 2012 | 61 | 2012 |
| Improved algorithmic complexity for the 3SEQ recombination detection algorithm HM Lam, O Ratmann, MF Boni Molecular biology and evolution 35 (1), 247-251, 2018 | 55 | 2018 |
| Dispersion of the HIV-1 epidemic in men who have sex with men in the Netherlands: a combined mathematical model and phylogenetic analysis D Bezemer, A Cori, O Ratmann, A van Sighem, HS Hermanides, ... PLoS Med 12 (11), e1001898, 2015 | 55 | 2015 |
| Phylogenetic tools for generalized HIV-1 epidemics: findings from the PANGEA-HIV methods comparison O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, ... Molecular biology and evolution 34 (1), 185-203, 2017 | 54 | 2017 |
| Explaining rapid reinfections in multiple-wave influenza outbreaks: Tristan da Cunha 1971 epidemic as a case study A Camacho, S Ballesteros, AL Graham, F Carrat, O Ratmann, B Cazelles Proceedings of the Royal Society B: Biological Sciences 278 (1725), 3635-3643, 2011 | 52 | 2011 |
| State-level tracking of COVID-19 in the United States HJT Unwin, S Mishra, VC Bradley, A Gandy, TA Mellan, H Coupland, ... Nature communications 11 (1), 1-9, 2020 | 51 | 2020 |
| OutbreakTools: a new platform for disease outbreak analysis using the R software T Jombart, DM Aanensen, M Baguelin, P Birrell, S Cauchemez, ... Epidemics 7, 28-34, 2014 | 43 | 2014 |
| Phylodynamic inference and model assessment with approximate bayesian computation: influenza as a case study O Ratmann, G Donker, A Meijer, C Fraser, K Koelle PLoS Comput Biol 8 (12), e1002835, 2012 | 42 | 2012 |
| PANGEA-HIV: phylogenetics for generalised epidemics in Africa D Pillay, J Herbeck, MS Cohen, T de Oliveira, C Fraser, O Ratmann, ... The Lancet Infectious Diseases 15 (3), 259-261, 2015 | 40 | 2015 |
| From evidence to inference: probing the evolution of protein interaction networks O Ratmann, C Wiuf, JW Pinney HFSP journal 3 (5), 290-306, 2009 | 39 | 2009 |
| Cultural conformity generates extremely stable traditions in bird song RF Lachlan, O Ratmann, S Nowicki Nature communications 9 (1), 1-9, 2018 | 38 | 2018 |
| Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver C Wymant, F Blanquart, T Golubchik, A Gall, M Bakker, D Bezemer, ... Virus evolution 4 (1), vey007, 2018 | 34 | 2018 |
Christophe FraserOxford Big Data Institute, Nuffield Department of Medicine, University of OxfordVerified email at bdi.ox.ac.uk
