| Zika virus depletes neural progenitors in human cerebral organoids through activation of the innate immune receptor TLR3 J Dang, SK Tiwari, G Lichinchi, Y Qin, VS Patil, AM Eroshkin, TM Rana Cell stem cell 19 (2), 258-265, 2016 | 784 | 2016 |
| Dynamics of human and viral RNA methylation during Zika virus infection G Lichinchi, BS Zhao, Y Wu, Z Lu, Y Qin, C He, TM Rana Cell host & microbe 20 (5), 666-673, 2016 | 367 | 2016 |
| The long noncoding RNA ROCKI regulates inflammatory gene expression Q Zhang, TC Chao, VS Patil, Y Qin, SK Tiwari, J Chiou, A Dobin, CM Tsai, ... The EMBO journal 38 (8), e100041, 2019 | 97 | 2019 |
| Glial cell diversity and methamphetamine-induced neuroinflammation in human cerebral organoids J Dang, SK Tiwari, K Agrawal, H Hui, Y Qin, TM Rana Molecular psychiatry 26 (4), 1194-1207, 2021 | 83 | 2021 |
| Zika virus infection reprograms global transcription of host cells to allow sustained infection SK Tiwari, J Dang, Y Qin, G Lichinchi, V Bansal, TM Rana Emerging microbes & infections 6 (1), 1-10, 2017 | 83 | 2017 |
| A multi-scale map of cell structure fusing protein images and interactions Y Qin, EL Huttlin, CF Winsnes, ML Gosztyla, L Wacheul, MR Kelly, ... Nature 600 (7889), 536-542, 2021 | 52 | 2021 |
| The Long Noncoding RNA HEAL Regulates HIV-1 Replication through Epigenetic Regulation of the HIV-1 Promoter TC Chao, Q Zhang, Z Li, SK Tiwari, Y Qin, E Yau, A Sanchez, G Singh, ... MBio 10 (5), 10.1128/mbio. 02016-19, 2019 | 52 | 2019 |
| Genome-wide integrative analysis of Zika-virus-infected neuronal stem cells reveals roles for microRNAs in cell cycle and stemness JW Dang, SK Tiwari, Y Qin, TM Rana Cell reports 27 (12), 3618-3628. e5, 2019 | 49 | 2019 |
| A fast and flexible framework for network-assisted genomic association DE Carlin, SH Fong, Y Qin, T Jia, JK Huang, B Bao, C Zhang, T Ideker Iscience 16, 155-161, 2019 | 27 | 2019 |
| Zika virus depletes neural stem cells and evades selective autophagy by suppressing the Fanconi anemia protein FANCC SK Tiwari, JW Dang, N Lin, Y Qin, S Wang, TM Rana EMBO reports 21 (12), e49183, 2020 | 19 | 2020 |
| A community-based approach to image analysis of cells, tissues and tumors JC Vizcarra, EA Burlingame, CB Hug, Y Goltsev, BS White, DR Tyson, ... Computerized Medical Imaging and Graphics 95, 102013, 2022 | 6 | 2022 |
| Mapping cell structure across scales by fusing protein images and interactions Y Qin, CF Winsnes, EL Huttlin, F Zheng, W Ouyang, J Park, A Pitea, ... bioRxiv, 2020.06. 21.163709, 2020 | 6 | 2020 |
| A multi-scale map of protein assemblies in the DNA damage response A Kratz, M Kim, MR Kelly, F Zheng, CA Koczor, J Li, K Ono, Y Qin, ... Cell Systems 14 (6), 447-463. e8, 2023 | 5 | 2023 |
| Strategies for network GWAS evaluated using classroom crowd science SH Fong, DE Carlin, K Ozturk, N Arang, B Bao, H Bennett, X Cai, K Chau, ... Cell systems 8 (4), 275-280, 2019 | 5 | 2019 |
| The long noncoding RNA HEAL regulates HIV-1 replication through epigenetic regulation of the HIV-1 promoter. mBio 10: e02016-19 TC Chao, Q Zhang, Z Li, SK Tiwari, Y Qin, E Yau, A Sanchez, G Singh, ... | 5 | 2019 |
| Classification and functional characterization of regulators of intracellular STING trafficking identified by genome-wide optical pooled screening M Gentili, RJ Carlson, B Liu, Q Hellier, J Andrews, Y Qin, PC Blainey, ... bioRxiv, 2024 | | 2024 |
| A map of osteosarcoma cell architecture reveals convergence of pediatric cancer mutations on protein assemblies M Hu, LV Schaffer, EL Huttlin, G Qian, A Latham, A Pal, LP Vaites, T Le, ... Cancer Research 84 (6_Supplement), 6543-6543, 2024 | | 2024 |
| A global multiscale map of protein assemblies from integration of protein interactions and images LV Schaffer, M Hu, EL Huttlin, G Qian, A Pal, N Soni, A Latham, LP Vaites, ... Cancer Research 84 (6_Supplement), 2348-2348, 2024 | | 2024 |
| CROPseq-multi: a versatile solution for multiplexed perturbation and decoding in pooled CRISPR screens RT Walton, Y Qin, PC Blainey bioRxiv, 2024.03. 17.585235, 2024 | | 2024 |
| Towards an in silico Cell Y Qin University of California, San Diego, 2023 | | 2023 |
