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David Fenyo
David Fenyo
Professor, New York University
Verified email at FenyoLab.org - Homepage
Title
Cited by
Cited by
Year
Classification and mutation prediction from non–small cell lung cancer histopathology images using deep learning
N Coudray, PS Ocampo, T Sakellaropoulos, N Narula, M Snuderl, ...
Nature medicine 24 (10), 1559-1567, 2018
14522018
Proteogenomics connects somatic mutations to signalling in breast cancer
P Mertins, DR Mani, KV Ruggles, MA Gillette, KR Clauser, P Wang, ...
Nature 534 (7605), 55-62, 2016
12432016
Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding
JF Scheid, H Mouquet, B Ueberheide, R Diskin, F Klein, TYK Oliveira, ...
Science 333 (6049), 1633-1637, 2011
12142011
Integrated proteogenomic characterization of human high-grade serous ovarian cancer
H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ...
Cell 166 (3), 755-765, 2016
7062016
A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes
D Fenyö, RC Beavis
Analytical chemistry 75 (4), 768-774, 2003
5652003
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis
EA Kapp, F Schütz, LM Connolly, JA Chakel, JE Meza, CA Miller, D Fenyo, ...
Proteomics 5 (13), 3475-3490, 2005
4472005
Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei
TN Siegel, DR Hekstra, LE Kemp, LM Figueiredo, JE Lowell, D Fenyo, ...
Genes & development 23 (9), 1063-1076, 2009
3782009
A robust pipeline for rapid production of versatile nanobody repertoires
PC Fridy, Y Li, S Keegan, MK Thompson, I Nudelman, JF Scheid, ...
Nature methods 11 (12), 1253-1260, 2014
3462014
Using annotated peptide mass spectrum libraries for protein identification
R Craig, JC Cortens, D Fenyo, RC Beavis
Journal of proteome research 5 (8), 1843-1849, 2006
3442006
Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities
S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ...
Cell 177 (4), 1035-1049. e19, 2019
3432019
Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels
P Mertins, F Yang, T Liu, DR Mani, VA Petyuk, MA Gillette, KR Clauser, ...
Molecular & cellular proteomics 13 (7), 1690-1704, 2014
3172014
RADARS, a bioinformatics solution that automates proteome mass spectral analysis, optimises protein identification, and archives data in a relational database
HI Field, D Fenyö, RC Beavis
PROTEOMICS: International Edition 2 (1), 36-47, 2002
2822002
Protein indentification using mass spectrometric information
D Fenyö, J Qin, BT Chait
Electrophoresis 19 (6), 998-1005, 1998
2721998
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983. e31, 2019
2452019
A modular cross-linking approach for exploring protein interactions
M Trester-Zedlitz, K Kamada, SK Burley, D Fenyö, BT Chait, TW Muir
Journal of the American Chemical Society 125 (9), 2416-2425, 2003
2352003
Sputtering by fast ions based on a sum of impulses
RE Johnson, BUR Sundqvist, A Hedin, D Fenyö
Physical Review B 40 (1), 49, 1989
2201989
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
2102020
Identifying the proteome: software tools
D Fenyö
Current Opinion in Biotechnology 11 (4), 391-395, 2000
2072000
Atypical and classical memory B cells produce Plasmodium falciparum neutralizing antibodies
MF Muellenbeck, B Ueberheide, B Amulic, A Epp, D Fenyo, CE Busse, ...
Journal of Experimental Medicine 210 (2), 389-399, 2013
2022013
A systems biology approach identifies FUT8 as a driver of melanoma metastasis
P Agrawal, B Fontanals-Cirera, E Sokolova, S Jacob, CA Vaiana, ...
Cancer cell 31 (6), 804-819. e7, 2017
1992017
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Articles 1–20