Timo Sachsenberg
Timo Sachsenberg
Postdoctoral Researcher, University of Tübingen
Verified email at informatik.uni-tuebingen.de
Title
Cited by
Cited by
Year
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ...
Nucleic acids research 47 (D1), D442-D450, 2019
11352019
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana
S Laubinger, T Sachsenberg, G Zeller, W Busch, JU Lohmann, G Rätsch, ...
Proceedings of the National Academy of Sciences 105 (25), 8795-8800, 2008
3302008
Stress‐induced changes in the Arabidopsis thaliana transcriptome analyzed using whole‐genome tiling arrays
G Zeller, SR Henz, CK Widmer, T Sachsenberg, G Rätsch, D Weigel, ...
The Plant Journal 58 (6), 1068-1082, 2009
3102009
OpenMS: a flexible open-source software platform for mass spectrometry data analysis
HL Röst, T Sachsenberg, S Aiche, C Bielow, H Weisser, F Aicheler, ...
Nature methods 13 (9), 741-748, 2016
2202016
Comprehensive analysis of alternative splicing across tumors from 8,705 patients
A Kahles, KV Lehmann, NC Toussaint, M Hüser, SG Stark, ...
Cancer cell 34 (2), 211-224. e6, 2018
1692018
Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins
K Kramer, T Sachsenberg, BM Beckmann, S Qamar, KL Boon, ...
Nature methods 11 (10), 1064-1070, 2014
1422014
At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana
S Laubinger, G Zeller, SR Henz, T Sachsenberg, CK Widmer, N Naouar, ...
Genome biology 9 (7), R112, 2008
1082008
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience
J Griss, AR Jones, T Sachsenberg, M Walzer, L Gatto, J Hartler, ...
Molecular & Cellular Proteomics 13 (10), 2765-2775, 2014
932014
BioContainers: an open-source and community-driven framework for software standardization
F da Veiga Leprevost, BA Grüning, S Alves Aflitos, HL Röst, J Uszkoreit, ...
Bioinformatics 33 (16), 2580-2582, 2017
912017
Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome
S Laubinger, G Zeller, SR Henz, S Buechel, T Sachsenberg, JW Wang, ...
Proceedings of the National Academy of Sciences 107 (41), 17466-17473, 2010
672010
The mzQuantML data standard for mass spectrometry–based quantitative studies in proteomics
M Walzer, D Qi, G Mayer, J Uszkoreit, M Eisenacher, T Sachsenberg, ...
Molecular & Cellular Proteomics 12 (8), 2332-2340, 2013
612013
Ten simple rules for taking advantage of Git and GitHub
Y Perez-Riverol, L Gatto, R Wang, T Sachsenberg, J Uszkoreit, ...
PLoS computational biology 12 (7), e1004947, 2016
602016
OpenMS–A platform for reproducible analysis of mass spectrometry data
J Pfeuffer, T Sachsenberg, O Alka, M Walzer, A Fillbrunn, L Nilse, ...
Journal of biotechnology 261, 142-148, 2017
402017
MetaProSIP: automated inference of stable isotope incorporation rates in proteins for functional metaproteomics
T Sachsenberg, FA Herbst, M Taubert, R Kermer, N Jehmlich, ...
Journal of proteome research 14 (2), 619-627, 2015
382015
In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics
E Audain, J Uszkoreit, T Sachsenberg, J Pfeuffer, X Liang, H Hermjakob, ...
Journal of proteomics 150, 170-182, 2017
262017
Workflows for automated downstream data analysis and visualization in large‐scale computational mass spectrometry
S Aiche, T Sachsenberg, E Kenar, M Walzer, B Wiswedel, T Kristl, ...
Proteomics 15 (8), 1443-1447, 2015
252015
Analysis of protein–RNA interactions in CRISPR proteins and effector complexes by UV-induced cross-linking and mass spectrometry
K Sharma, A Hrle, K Kramer, T Sachsenberg, RHJ Staals, L Randau, ...
Methods 89, 138-148, 2015
172015
mzTab-M: A data standard for sharing quantitative results in mass spectrometry metabolomics
N Hoffmann, J Rein, T Sachsenberg, J Hartler, K Haug, G Mayer, O Alka, ...
Analytical chemistry 91 (5), 3302-3310, 2019
162019
LFQProfiler and RNPxl: Open-Source Tools for Label-Free Quantification and Protein–RNA Cross-Linking Integrated into Proteome Discoverer
J Veit, T Sachsenberg, A Chernev, F Aicheler, H Urlaub, O Kohlbacher
Journal of proteome research 15 (9), 3441-3448, 2016
152016
Expanding the use of spectral libraries in proteomics
EW Deutsch, Y Perez-Riverol, RJ Chalkley, M Wilhelm, S Tate, ...
Journal of proteome research 17 (12), 4051-4060, 2018
122018
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