| A promoter-level mammalian expression atlas Fantom Consortium Nature 507 (7493), 462, 2014 | 1253 | 2014 |
| JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ... Nucleic acids research 46 (D1), D260-D266, 2018 | 1160 | 2018 |
| JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles A Mathelier, X Zhao, AW Zhang, F Parcy, R Worsley-Hunt, DJ Arenillas, ... Nucleic acids research 42 (D1), D142-D147, 2014 | 1082 | 2014 |
| JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles A Mathelier, O Fornes, DJ Arenillas, C Chen, G Denay, J Lee, W Shi, ... Nucleic acids research 44 (D1), D110-D115, 2016 | 957 | 2016 |
| JASPAR 2020: update of the open-access database of transcription factor binding profiles O Fornes, JA Castro-Mondragon, A Khan, R Van der Lee, X Zhang, ... Nucleic acids research 48 (D1), D87-D92, 2020 | 613 | 2020 |
| An integrated expression atlas of miRNAs and their promoters in human and mouse D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Ċström, ... Nature biotechnology 35 (9), 872-878, 2017 | 311 | 2017 |
| The next generation of transcription factor binding site prediction A Mathelier, WW Wasserman PLoS computational biology 9 (9), e1003214, 2013 | 183 | 2013 |
| Intervene: a tool for intersection and visualization of multiple gene or genomic region sets A Khan, A Mathelier BMC bioinformatics 18 (1), 1-8, 2017 | 165 | 2017 |
| MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data A Mathelier, A Carbone Bioinformatics 26 (18), 2226-2234, 2010 | 162 | 2010 |
| ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments J Chèneby, M Gheorghe, M Artufel, A Mathelier, B Ballester Nucleic acids research 46 (D1), D267-D275, 2018 | 158 | 2018 |
| TFBSshape: a motif database for DNA shape features of transcription factor binding sites L Yang, T Zhou, I Dror, A Mathelier, WW Wasserman, R Gordân, R Rohs Nucleic acids research 42 (D1), D148-D155, 2014 | 123 | 2014 |
| DNA shape features improve transcription factor binding site predictions in vivo A Mathelier, B Xin, TP Chiu, L Yang, R Rohs, WW Wasserman Cell systems 3 (3), 278-286. e4, 2016 | 119 | 2016 |
| MirGeneDB 2.0: the metazoan microRNA complement B Fromm, D Domanska, E Hĝye, V Ovchinnikov, W Kang, ... Nucleic acids research 48 (D1), D132-D141, 2020 | 117* | 2020 |
| Identification of altered cis-regulatory elements in human disease A Mathelier, W Shi, WW Wasserman Trends in Genetics 31 (2), 67-76, 2015 | 99 | 2015 |
| Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals M Lizio, J Harshbarger, I Abugessaisa, S Noguchi, A Kondo, J Severin, ... Nucleic acids research, gkw995, 2016 | 81 | 2016 |
| DNA methylation at enhancers identifies distinct breast cancer lineages T Fleischer, X Tekpli, A Mathelier, S Wang, D Nebdal, HP Dhakal, ... Nature communications 8 (1), 1-14, 2017 | 76 | 2017 |
| Large scale chromosomal mapping of human microRNA structural clusters A Mathelier, A Carbone Nucleic acids research 41 (8), 4392-4408, 2013 | 63 | 2013 |
| A map of direct TF-DNA interactions in the human genome M Gheorghe, GK Sandve, A Khan, J Cheneby, B Ballester, A Mathelier Nucleic Acids Research, gky1210, 2018 | 49 | 2018 |
| Evaluating the impact of single nucleotide variants on transcription factor binding W Shi, O Fornes, A Mathelier, WW Wasserman Nucleic acids research 44 (21), 10106-10116, 2016 | 47 | 2016 |
| Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment RW Hunt, A Mathelier, L Del Peso, WW Wasserman BMC genomics 15 (1), 1-19, 2014 | 46 | 2014 |
Wyeth WassermanProfessor of Medical Genetics, University of British ColumbiaVerified email at cmmt.ubc.ca
