| Inferring domain–domain interactions from protein–protein interactions M Deng, S Mehta, F Sun, T Chen Genome research 12 (10), 1540-1548, 2002 | 637 | 2002 |
| Correlation detection strategies in microbial data sets vary widely in sensitivity and precision LCX Weiss, Sophie, Will Van Treuren, Catherine Lozupone, Karoline Faust ... The ISME Journal. 10, 1669–1681, 2016 | 624 | 2016 |
| Marine bacterial, archaeal and protistan association networks reveal ecological linkages JA Steele, PD Countway, L Xia, PD Vigil, JM Beman, DY Kim, CET Chow, ... The ISME journal 5 (9), 1414-1425, 2011 | 600 | 2011 |
| Prediction of protein function using protein-protein interaction data M Deng, K Zhang, S Mehta, T Chen, F Sun Journal of Computational Biology 10 (6), 947-960, 2003 | 455 | 2003 |
| VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data. J Ren, NA Ahlgren, YY Lu, JA Fuhrman, FZ Sun Microbiome 5 (1), 69, 2017 | 448 | 2017 |
| A dynamic programming algorithm for haplotype block partitioning K Zhang, M Deng, T Chen, MS Waterman, F Sun Proceedings of the National Academy of Sciences 99 (11), 7335-7339, 2002 | 446 | 2002 |
| Taq DNA polymerase slippage mutation rates measured by PCR and quasi‐likelihood analysis:(CA/GT) n and (A/T) n microsatellites D Shinde, Y Lai, F Sun, N Arnheim Nucleic acids research 31 (3), 974-980, 2003 | 374 | 2003 |
| Haplotype block structure and its applications to association studies: power and study designs K Zhang, P Calabrese, M Nordborg, F Sun The American Journal of Human Genetics 71 (6), 1386-1394, 2002 | 350 | 2002 |
| Identifying viruses from metagenomic data using deep learning J Ren, K Song, C Deng, NA Ahlgren, JA Fuhrman, Y Li, X Xie, R Poplin, ... Quantitative Biology 8 (1), 64-77, 2020 | 308 | 2020 |
| Identifying viruses from metagenomic data by deep learning J Ren, K Song, C Deng, NA Ahlgren, JA Fuhrman, Y Li, X Xie, F Sun arXiv preprint arXiv:1806.07810, 2018 | 308* | 2018 |
| The relationship between microsatellite slippage mutation rate and the number of repeat units Y Lai, F Sun Molecular biology and evolution 20 (12), 2123-2131, 2003 | 299 | 2003 |
| Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors Q Ruan, D Dutta, MS Schwalbach, JA Steele, JA Fuhrman, F Sun Bioinformatics 22 (20), 2532-2538, 2006 | 298 | 2006 |
| A critical assessment of Mus musculus gene function prediction using integrated genomic evidence L Peņa-Castillo, M Tasan, CL Myers, H Lee, T Joshi, C Zhang, Y Guan, ... Genome Biol 9 (Suppl 1), S2, 2008 | 297 | 2008 |
| Clustering of Caucasian Leber hereditary optic neuropathy patients containing the 11778 or 14484 mutations on an mtDNA lineage. MD Brown, F Sun, DC Wallace American journal of human genetics 60 (2), 381, 1997 | 281 | 1997 |
| Alignment-free oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences NA Ahlgren, J Ren, YY Lu, JA Fuhrman, F Sun Nucleic Acids Research 45 (1), 39-53, 2017 | 242 | 2017 |
| CancerLocator: non-invasive cancer diagnosis and tissue-of-origin prediction using methylation profiles of cell-free DNA S Kang, Q Li, Q Chen, Y Zhou, S Park, G Lee, B Grimes, K Krysan, M Yu, ... Genome Biology 18 (1), 53, 2017 | 237 | 2017 |
| Assessment of the reliability of protein-protein interactions and protein function prediction M Deng, F Sun, T Chen Proc. of Pacific Symposium Biocomputing, Grand Wailea, Maui, Hawaii, 140-151, 2002 | 230 | 2002 |
| Alignment-free sequence comparison (I): statistics and power G Reinert, D Chew, F Sun, MS Waterman Journal of Computational Biology 16 (12), 1615-1634, 2009 | 227 | 2009 |
| Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies K Zhang, ZS Qin, JS Liu, T Chen, MS Waterman, F Sun Genome Research 14 (5), 908-916, 2004 | 227 | 2004 |
| An integrated probabilistic model for functional prediction of proteins M Deng, T Chen, F Sun Journal of Computational Biology 11 (2-3), 463-475, 2004 | 219 | 2004 |
Ting ChenProfessor of Computer Science, Tsinghua UniversityVerified email at tsinghua.edu.cn
