Shinichi Sunagawa

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Peer BorkEMBLVerified email at embl.de
Daniel R. MendeAsst. Professor, Amsterdam University Medical Center, University of AmsterdamVerified email at amsterdamumc.nl
Monica MedinaProfessor of Biology, Penn State UniversityVerified email at psu.edu
Jaime Huerta-CepasGroup Leader at CBGP (UPM-INIA-CSIC), Madrid, SpainVerified email at embl.de
Luis Pedro CoelhoISTBI, Fudan UniversityVerified email at fudan.edu.cn
Georg ZellerEMBL, HeidelbergVerified email at embl.de
Sofia K. ForslundJunior Group Leader, ECRC (joint Max Delbrück Center and Charité University Hospital unit), BerlinVerified email at embl.de
Michael K. DeSalvoVerified email at ucmerced.edu
Christian R VoolstraUniversity of Konstanz / King Abdullah University of Science and Technology (KAUST)Verified email at uni-konstanz.de
Jens Roat KultimaDanish Competition and Consumer Agency; Bioinformatics and Economic Fraud SpecialistVerified email at kfst.dk
Paul Igor CosteaBASFVerified email at basf.com
Manimozhiyan ArumugamAssociate Professor, Faculty of Health and Medical Sciences, University of CopenhagenVerified email at sund.ku.dk
Guillem SalazarInstitute of Microbiology - ETH ZurichVerified email at ethz.ch
Karsenti EricSenior scientist EMBLVerified email at embl.de
Alison S. WallerBrock UniversityVerified email at brocku.ca
Jeroen RaesProfessor, Faculty of Medicine, Rega Institute, KU Leuven; Group Leader Microbiome, VIB, BelgiumVerified email at med.kuleuven.be
Pascal HingampAssociate Professor, Aix Marseille University, FranceVerified email at univ-amu.fr
Hiroyuki OgataInstitute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Julien TapDanone ResearchVerified email at danone.com
Gipsi Lima MendezU.NamurVerified email at uclouvain.be

Shinichi Sunagawa

ETH Zurich; Swiss Institute of Bioinformatics

Verified email at ethz.ch - Homepage

Microbiome Research Eco-Systems Biology Bioinformatics Computational Biology


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Enterotypes of the human gut microbiome M Arumugam, J Raes, E Pelletier, D Le Paslier, T Yamada, DR Mende, ... Nature 473 (7346), 174-180, 2011	6538	2011
Richness of human gut microbiome correlates with metabolic markers E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ... Nature 500 (7464), 541-546, 2013	3692	2013
Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 1261359, 2015	1742	2015
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic acids research 44 (D1), D286-D293, 2016	1582	2016
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota K Forslund, F Hildebrand, T Nielsen, G Falony, E Le Chatelier, ... Nature 528 (7581), 262-266, 2015	1553	2015
An integrated catalog of reference genes in the human gut microbiome J Li, H Jia, X Cai, H Zhong, Q Feng, S Sunagawa, M Arumugam, ... Nature biotechnology 32 (8), 834-841, 2014	1517	2014
Eukaryotic plankton diversity in the sunlit ocean C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ... Science 348 (6237), 1261605, 2015	1350	2015
Human gut microbes impact host serum metabolome and insulin sensitivity HK Pedersen, V Gudmundsdottir, HB Nielsen, T Hyotylainen, T Nielsen, ... Nature 535 (7612), 376-381, 2016	1260	2016
Structure and function of the global topsoil microbiome M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ... Nature 560 (7717), 233-237, 2018	884	2018
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ... Nature biotechnology 32 (8), 822-828, 2014	848	2014
Potential of fecal microbiota for early‐stage detection of colorectal cancer G Zeller, J Tap, AY Voigt, S Sunagawa, JR Kultima, PI Costea, A Amiot, ... Molecular systems biology 10 (11), 766, 2014	789	2014
Genomic variation landscape of the human gut microbiome S Schloissnig, M Arumugam, S Sunagawa, M Mitreva, J Tap, A Zhu, ... Nature 493 (7430), 45-50, 2013	783	2013
Salt-responsive gut commensal modulates TH17 axis and disease N Wilck, MG Matus, SM Kearney, SW Olesen, K Forslund, ... Nature 551 (7682), 585-589, 2017	766	2017
Determinants of community structure in the global plankton interactome G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ... Science 348 (6237), 1262073, 2015	671	2015
Enterotypes in the landscape of gut microbial community composition PI Costea, F Hildebrand, M Arumugam, F Bäckhed, MJ Blaser, ... Nature microbiology 3 (1), 8-16, 2018	569	2018
Patterns and ecological drivers of ocean viral communities JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ... Science 348 (6237), 1261498, 2015	555	2015
Plankton networks driving carbon export in the oligotrophic ocean L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ... Nature 532 (7600), 465-470, 2016	520	2016
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses S Roux, JR Brum, BE Dutilh, S Sunagawa, MB Duhaime, A Loy, ... Nature 537, 689–693, 2016	519	2016
Towards standards for human fecal sample processing in metagenomic studies PI Costea, G Zeller, S Sunagawa, E Pelletier, A Alberti, F Levenez, ... Nature biotechnology 35 (11), 1069-1076, 2017	492	2017
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ... Nature medicine 25 (4), 679-689, 2019	467	2019

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