Arun Ramani
Arun Ramani
The Hospital for Sick Children
Verified email at
TitleCited byYear
How complete are current yeast and human protein-interaction networks?
GT Hart, AK Ramani, EM Marcotte
Genome biology 7 (11), 120, 2006
Comparative experiments on learning information extractors for proteins and their interactions
R Bunescu, R Ge, RJ Kate, EM Marcotte, RJ Mooney, AK Ramani, ...
Artificial intelligence in medicine 33 (2), 139-155, 2005
Protein interaction networks from yeast to human
P Bork, LJ Jensen, C Von Mering, AK Ramani, I Lee, EM Marcotte
Current opinion in structural biology 14 (3), 292-299, 2004
Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome
AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
Genome biology 6 (5), R40, 2005
Exploiting the co-evolution of interacting proteins to discover interaction specificity
AK Ramani, EM Marcotte
Journal of molecular biology 327 (1), 273-284, 2003
Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation
JY Ip, D Schmidt, Q Pan, AK Ramani, AG Fraser, DT Odom, BJ Blencowe
Genome research 21 (3), 390-401, 2011
Genome-wide analysis of alternative splicing in Caenorhabditis elegans
AK Ramani, JA Calarco, Q Pan, S Mavandadi, Y Wang, AC Nelson, ...
Genome research 21 (2), 342-348, 2011
High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans
AK Ramani, AC Nelson, P Kapranov, I Bell, TR Gingeras, AG Fraser
Genome biology 10 (9), R101, 2009
A map of human protein interactions derived from co‐expression of human mRNAs and their orthologs
AK Ramani, Z Li, GT Hart, MW Carlson, DR Boutz, EM Marcotte
Molecular systems biology 4 (1), 2008
Integrating co-occurrence statistics with information extraction for robust retrieval of protein interactions from Medline
R Bunescu, R Mooney, A Ramani, E Marcotte
Proceedings of the HLT-NAACL BioNLP Workshop on Linking Natural Language and …, 2006
Spatial genomic heterogeneity in diffuse intrinsic pontine and midline high-grade glioma: implications for diagnostic biopsy and targeted therapeutics
LM Hoffman, M DeWire, S Ryall, P Buczkowicz, J Leach, L Miles, ...
Acta neuropathologica communications 4 (1), 1, 2016
A pair of RNA-binding proteins controls networks of splicing events contributing to specialization of neural cell types
AD Norris, S Gao, ML Norris, D Ray, AK Ramani, AG Fraser, Q Morris, ...
Molecular cell 54 (6), 946-959, 2014
The majority of animal genes are required for wild-type fitness
AK Ramani, T Chuluunbaatar, AJ Verster, H Na, V Vu, N Pelte, ...
Cell 148 (4), 792-802, 2012
Comparative RNAi screens in C. elegans and C. briggsae reveal the impact of developmental system drift on gene function
AJ Verster, AK Ramani, SJ McKay, AG Fraser
PLoS genetics 10 (2), 2014
Learning to extract proteins and their interactions from medline abstracts
R Bunescu, R Ge, RJ Kate, RJ Mooney, YW Wong, EM Marcotte, ...
Proceedings of the ICML-2003 Workshop on Machine Learning in Bioinformatics …, 2003
Expanding the boundaries of RNA sequencing as a diagnostic tool for rare mendelian disease
HD Gonorazky, S Naumenko, AK Ramani, V Nelakuditi, P Mashouri, ...
The American Journal of Human Genetics 104 (3), 466-483, 2019
Extracting gene and protein names from biomedical abstracts
R Bunescu, R Ge, RJ Mooney, E Marcotte, AK Ramani
Unpublished Technical Note, Available from http://www. cs. utexas. edu/users …, 2002
Identification of complex genomic rearrangements in cancers using CouGaR
M Dzamba, AK Ramani, P Buczkowicz, Y Jiang, M Yu, C Hawkins, ...
Genome research 27 (1), 107-117, 2017
Using biomedical literature mining to consolidate the set of known human protein-protein interactions
A Ramani, R Bunescu, R Mooney, E Marcotte
Proceedings of the ACL-ISMB Workshop on Linking Biological Literature …, 2005
Tamoxifen therapy in a murine model of myotubular myopathy
N Maani, N Sabha, K Rezai, A Ramani, L Groom, N Eltayeb, ...
Nature communications 9 (1), 1-16, 2018
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