|How complete are current yeast and human protein-interaction networks?|
GT Hart, AK Ramani, EM Marcotte
Genome biology 7 (11), 120, 2006
|Comparative experiments on learning information extractors for proteins and their interactions|
R Bunescu, R Ge, RJ Kate, EM Marcotte, RJ Mooney, AK Ramani, ...
Artificial intelligence in medicine 33 (2), 139-155, 2005
|Protein interaction networks from yeast to human|
P Bork, LJ Jensen, C Von Mering, AK Ramani, I Lee, EM Marcotte
Current opinion in structural biology 14 (3), 292-299, 2004
|Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome|
AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
Genome biology 6 (5), R40, 2005
|Exploiting the co-evolution of interacting proteins to discover interaction specificity|
AK Ramani, EM Marcotte
Journal of molecular biology 327 (1), 273-284, 2003
|Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation|
JY Ip, D Schmidt, Q Pan, AK Ramani, AG Fraser, DT Odom, BJ Blencowe
Genome research 21 (3), 390-401, 2011
|Genome-wide analysis of alternative splicing in Caenorhabditis elegans|
AK Ramani, JA Calarco, Q Pan, S Mavandadi, Y Wang, AC Nelson, ...
Genome research 21 (2), 342-348, 2011
|High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans|
AK Ramani, AC Nelson, P Kapranov, I Bell, TR Gingeras, AG Fraser
Genome biology 10 (9), R101, 2009
|A map of human protein interactions derived from co‐expression of human mRNAs and their orthologs|
AK Ramani, Z Li, GT Hart, MW Carlson, DR Boutz, EM Marcotte
Molecular systems biology 4 (1), 2008
|Integrating co-occurrence statistics with information extraction for robust retrieval of protein interactions from Medline|
R Bunescu, R Mooney, A Ramani, E Marcotte
Proceedings of the HLT-NAACL BioNLP Workshop on Linking Natural Language and …, 2006
|Spatial genomic heterogeneity in diffuse intrinsic pontine and midline high-grade glioma: implications for diagnostic biopsy and targeted therapeutics|
LM Hoffman, M DeWire, S Ryall, P Buczkowicz, J Leach, L Miles, ...
Acta neuropathologica communications 4 (1), 1, 2016
|A pair of RNA-binding proteins controls networks of splicing events contributing to specialization of neural cell types|
AD Norris, S Gao, ML Norris, D Ray, AK Ramani, AG Fraser, Q Morris, ...
Molecular cell 54 (6), 946-959, 2014
|The majority of animal genes are required for wild-type fitness|
AK Ramani, T Chuluunbaatar, AJ Verster, H Na, V Vu, N Pelte, ...
Cell 148 (4), 792-802, 2012
|Comparative RNAi screens in C. elegans and C. briggsae reveal the impact of developmental system drift on gene function|
AJ Verster, AK Ramani, SJ McKay, AG Fraser
PLoS genetics 10 (2), 2014
|Learning to extract proteins and their interactions from medline abstracts|
R Bunescu, R Ge, RJ Kate, RJ Mooney, YW Wong, EM Marcotte, ...
Proceedings of the ICML-2003 Workshop on Machine Learning in Bioinformatics …, 2003
|Expanding the boundaries of RNA sequencing as a diagnostic tool for rare mendelian disease|
HD Gonorazky, S Naumenko, AK Ramani, V Nelakuditi, P Mashouri, ...
The American Journal of Human Genetics 104 (3), 466-483, 2019
|Extracting gene and protein names from biomedical abstracts|
R Bunescu, R Ge, RJ Mooney, E Marcotte, AK Ramani
Unpublished Technical Note, Available from http://www. cs. utexas. edu/users …, 2002
|Identification of complex genomic rearrangements in cancers using CouGaR|
M Dzamba, AK Ramani, P Buczkowicz, Y Jiang, M Yu, C Hawkins, ...
Genome research 27 (1), 107-117, 2017
|Using biomedical literature mining to consolidate the set of known human protein-protein interactions|
A Ramani, R Bunescu, R Mooney, E Marcotte
Proceedings of the ACL-ISMB Workshop on Linking Biological Literature …, 2005
|Tamoxifen therapy in a murine model of myotubular myopathy|
N Maani, N Sabha, K Rezai, A Ramani, L Groom, N Eltayeb, ...
Nature communications 9 (1), 1-16, 2018