Tim F Cooper
Tim F Cooper
Institute of Natural and Mathematical Sciences, Massey University
Verified email at massey.ac.nz - Homepage
Title
Cited by
Cited by
Year
Parallel changes in gene expression after 20,000 generations of evolution in Escherichia coli
TF Cooper, DE Rozen, RE Lenski
Proceedings of the National Academy of Sciences 100 (3), 1072-1077, 2003
4642003
Negative epistasis between beneficial mutations in an evolving bacterial population
AI Khan, DM Dinh, D Schneider, RE Lenski, TF Cooper
Science 332 (6034), 1193-1196, 2011
4352011
Second-order selection for evolvability in a large Escherichia coli population
RJ Woods, JE Barrick, TF Cooper, U Shrestha, MR Kauth, RE Lenski
Science 331 (6023), 1433-1436, 2011
2752011
Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli
TF Cooper
PLoS biology 5 (9), 2007
1782007
The causes of epistasis
JAGM de Visser, TF Cooper, SF Elena
Proceedings of the Royal Society B: Biological Sciences 278 (1725), 3617-3624, 2011
1622011
Postsegregational killing does not increase plasmid stability but acts to mediate the exclusion of competing plasmids
TF Cooper, JA Heinemann
Proceedings of the National Academy of Sciences 97 (23), 12643-12648, 2000
1492000
Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations
TF Cooper, RE Lenski
BMC evolutionary biology 10 (1), 11, 2010
992010
Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli
TF Cooper, SK Remold, RE Lenski, D Schneider
PLoS genetics 4 (2), 2008
852008
The environment affects epistatic interactions to alter the topology of an empirical fitness landscape
KM Flynn, TF Cooper, FBG Moore, VS Cooper
PLoS genetics 9 (4), 2013
642013
Measuring selection coefficients below 10− 3: method, questions, and prospects
R Gallet, TF Cooper, SF Elena, T Lenormand
Genetics 190 (1), 175-186, 2012
562012
Adaptive evolution of the lactose utilization network in experimentally evolved populations of Escherichia coli
S Quan, JCJ Ray, Z Kwota, T Duong, G Balázsi, TF Cooper, RD Monds
PLoS genetics 8 (1), 2012
532012
A negative relationship between mutation pleiotropy and fitness effect in yeast
TF Cooper, EA Ostrowski, M Travisano
Evolution: International Journal of Organic Evolution 61 (6), 1495-1499, 2007
532007
Parasites and mutational load: an experimental test of a pluralistic theory for the evolution of sex
TF Cooper, RE Lenski, SF Elena
Proceedings of the Royal Society B: Biological Sciences 272 (1560), 311-317, 2005
502005
Identification and dynamics of a beneficial mutation in a long-term evolution experiment with Escherichia coli
MT Stanek, TF Cooper, RE Lenski
BMC evolutionary biology 9 (1), 302, 2009
492009
The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens
MJ McDonald, TF Cooper, HJE Beaumont, PB Rainey
Biology letters 7 (1), 98-100, 2011
442011
Effect of random and hub gene disruptions on environmental and mutational robustness in Escherichia coli
TF Cooper, AP Morby, A Gunn, D Schneider
Bmc Genomics 7 (1), 237, 2006
442006
Selection for plasmid post–segregational killing depends on multiple infection: evidence for the selection of more virulent parasites through parasite–level competition
TF Cooper, JA Heinemann
Proceedings of the Royal Society B: Biological Sciences 272 (1561), 403-410, 2005
422005
Robust detection of hierarchical communities from Escherichia coli gene expression data
S Trevińo III, Y Sun, TF Cooper, KE Bassler
PLoS computational biology 8 (2), 2012
412012
Evolution of stable ecosystems in populations of digital organisms
TF Cooper, C Ofria
Artificial Life VIII: Proceedings of the Eighth International Conference on …, 2003
402003
Genetic background affects epistatic interactions between two beneficial mutations
Y Wang, C Diaz Arenas, DM Stoebel, TF Cooper
Biology letters 9 (1), 20120328, 2013
382013
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