Xiaole Shirley Liu
Xiaole Shirley Liu
Professor, Biostatistics and Computational Biology, Dana-Farber and Harvard
Verified email at jimmy.harvard.edu - Homepage
TitleCited byYear
Model-based analysis of ChIP-Seq (MACS)
Y Zhang, T Liu, CA Meyer, J Eeckhoute, DS Johnson, BE Bernstein, ...
Genome biology 9 (9), 1, 2008
66322008
Genome-wide analysis of estrogen receptor binding sites
JS Carroll, CA Meyer, J Song, W Li, TR Geistlinger, J Eeckhoute, ...
Nature genetics 38 (11), 1289, 2006
13712006
Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1
JS Carroll, XS Liu, AS Brodsky, W Li, CA Meyer, AJ Szary, J Eeckhoute, ...
Cell 122 (1), 33-43, 2005
12742005
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
11402012
Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2
M Ko, Y Huang, AM Jankowska, UJ Pape, M Tahiliani, HS Bandukwala, ...
Nature 468 (7325), 839, 2010
10982010
BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.
X Liu, DL Brutlag, JS Liu
Pacific symposium on biocomputing 6, 127-138, 2001
9972001
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775-1787, 2010
8452010
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
M Lupien, J Eeckhoute, CA Meyer, Q Wang, Y Zhang, W Li, JS Carroll, ...
Cell 132 (6), 958-970, 2008
8452008
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein–DNA association
JD Lieb, X Liu, D Botstein, PO Brown
Nature genetics 28 (4), 327, 2001
8082001
An algorithm for finding protein–DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
XS Liu, DL Brutlag, JS Liu
Nature biotechnology 20 (8), 835, 2002
8032002
Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer
Q Wang, W Li, Y Zhang, X Yuan, K Xu, J Yu, Z Chen, R Beroukhim, ...
Cell 138 (2), 245-256, 2009
7872009
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells
WA Pastor, UJ Pape, Y Huang, HR Henderson, R Lister, M Ko, ...
Nature 473 (7347), 394, 2011
7422011
Chromatin structure analyses identify miRNA promoters
F Ozsolak, LL Poling, Z Wang, H Liu, XS Liu, RG Roeder, X Zhang, ...
Genes & development 22 (22), 3172-3183, 2008
6562008
The JAK2/STAT3 signaling pathway is required for growth of CD44+CD24 stem cell–like breast cancer cells in human tumors
LLC Marotta, V Almendro, A Marusyk, M Shipitsin, J Schemme, SR Walker, ...
The Journal of clinical investigation 121 (7), 2723-2735, 2011
6382011
Differential chromatin marking of introns and expressed exons by H3K36me3
P Kolasinska-Zwierz, T Down, I Latorre, T Liu, XS Liu, J Ahringer
Nature genetics 41 (3), 376, 2009
6322009
Identifying ChIP-seq enrichment using MACS
J Feng, T Liu, B Qin, Y Zhang, XS Liu
Nature protocols 7 (9), 1728, 2012
6292012
PPARγ and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale
MI Lefterova, Y Zhang, DJ Steger, M Schupp, J Schug, A Cristancho, ...
Genes & development 22 (21), 2941-2952, 2008
6082008
A hierarchical network of transcription factors governs androgen receptor-dependent prostate cancer growth
Q Wang, W Li, XS Liu, JS Carroll, OA Jšnne, EK Keeton, AM Chinnaiyan, ...
Molecular cell 27 (3), 380-392, 2007
5882007
EZH2 Oncogenic Activity in Castration-Resistant Prostate Cancer Cells Is Polycomb-Independent
K Xu, ZJ Wu, AC Groner, HH He, C Cai, RT Lis, X Wu, EC Stack, M Loda, ...
Science 338 (6113), 1465-1469, 2012
5162012
A circadian rhythm orchestrated by histone deacetylase 3 controls hepatic lipid metabolism
D Feng, T Liu, Z Sun, A Bugge, SE Mullican, T Alenghat, XS Liu, MA Lazar
Science 331 (6022), 1315, 2011
4752011
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Articles 1–20