| Evolution of pathogenicity and sexual reproduction in eight Candida genomes G Butler, MD Rasmussen, MF Lin, MAS Santos, S Sakthikumar, CA Munro, ... Nature 459 (7247), 657-662, 2009 | 937 | 2009 |
| A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis DA Fitzpatrick, ME Logue, JE Stajich, G Butler BMC evolutionary biology 6 (1), 1-15, 2006 | 572 | 2006 |
| Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling M Clarke, AJ Lohan, B Liu, I Lagkouvardos, S Roy, N Zafar, C Bertelli, ... Genome biology 14 (2), 1-15, 2013 | 244 | 2013 |
| Horizontal gene transfer in fungi DA Fitzpatrick FEMS microbiology letters 329 (1), 1-8, 2012 | 223 | 2012 |
| Genome phylogenies indicate a meaningful α-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales DA Fitzpatrick, CJ Creevey, JO McInerney Molecular Biology and Evolution 23 (1), 74-85, 2006 | 143 | 2006 |
| Does a tree–like phylogeny only exist at the tips in the prokaryotes? CJ Creevey, DA Fitzpatrick, GK Philip, RJ Kinsella, MJ O'Connell, ... Proceedings of the Royal Society of London. Series B: Biological Sciences …, 2004 | 137 | 2004 |
| Fatty acid biosynthesis in Mycobacterium tuberculosis: lateral gene transfer, adaptive evolution, and gene duplication RJ Kinsella, DA Fitzpatrick, CJ Creevey, JO McInerney Proceedings of the National Academy of Sciences 100 (18), 10320-10325, 2003 | 99 | 2003 |
| Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser DA Fitzpatrick, P O'Gaora, KP Byrne, G Butler BMC genomics 11 (1), 1-14, 2010 | 95 | 2010 |
| Antibiotic resistance genes across a wide variety of metagenomes D Fitzpatrick, F Walsh FEMS microbiology ecology 92 (2), fiv168, 2016 | 90 | 2016 |
| The copper regulon of the human fungal pathogen Cryptococcus neoformans H99 C Ding, J Yin, EMM Tovar, DA Fitzpatrick, DG Higgins, DJ Thiele Molecular microbiology 81 (6), 1560-1576, 2011 | 87 | 2011 |
| Genomic and Proteomic Dissection of the Ubiquitous Plant Pathogen, Armillaria mellea: Toward a New Infection Model System C Collins, TM Keane, DJ Turner, G O’Keeffe, DA Fitzpatrick, S Doyle Journal of proteome research 12 (6), 2552-2570, 2013 | 73 | 2013 |
| Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria G Sipos, AN Prasanna, MC Walter, E O’Connor, B Bálint, K Krizsán, ... Nature ecology & evolution 1 (12), 1931-1941, 2017 | 72 | 2017 |
| Universally distributed single-copy genes indicate a constant rate of horizontal transfer CJ Creevey, T Doerks, DA Fitzpatrick, J Raes, P Bork PloS one 6 (8), e22099, 2011 | 66 | 2011 |
| Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis DA Fitzpatrick, ME Logue, G Butler BMC evolutionary biology 8 (1), 1-15, 2008 | 66 | 2008 |
| The anhydrobiotic potential and molecular phylogenetics of species and strains of Panagrolaimus (Nematoda, Panagrolaimidae) AJ Shannon, JA Browne, J Boyd, DA Fitzpatrick, AM Burnell Journal of Experimental Biology 208 (12), 2433-2445, 2005 | 63 | 2005 |
| Regulation of nonribosomal peptide synthesis: bis-thiomethylation attenuates gliotoxin biosynthesis in Aspergillus fumigatus SK Dolan, RA Owens, G O’Keeffe, S Hammel, DA Fitzpatrick, GW Jones, ... Chemistry & biology 21 (8), 999-1012, 2014 | 59 | 2014 |
| Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom EM Medina, GW Jones, DA Fitzpatrick Journal of molecular evolution 73 (3), 116-133, 2011 | 50 | 2011 |
| Epidemiological and virological investigations of equine influenza outbreaks in I reland (2010–2012) S Gildea, DA Fitzpatrick, A Cullinane Influenza and other respiratory viruses 7, 61-72, 2013 | 47 | 2013 |
| Multiple lineage specific expansions within the guanylyl cyclase gene family DA Fitzpatrick, DM O'Halloran, AM Burnell BMC Evolutionary Biology 6 (1), 1-18, 2006 | 44 | 2006 |
| A pluralistic account of homology: adapting the models to the data LS Haggerty, PA Jachiet, WP Hanage, DA Fitzpatrick, P Lopez, ... Molecular biology and evolution 31 (3), 501-516, 2014 | 43 | 2014 |
