Yassen Assenov
Yassen Assenov
Group Leader
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Computing topological parameters of biological networks
Y Assenov, F Ramírez, SE Schelhorn, T Lengauer, M Albrecht
Bioinformatics 24 (2), 282-284, 2008
11712008
Comprehensive analysis of DNA methylation data with RnBeads
Y Assenov, F Müller, P Lutsik, J Walter, T Lengauer, C Bock
Nature methods 11 (11), 1138-1140, 2014
4532014
Topological analysis and interactive visualization of biological networks and protein structures
NT Doncheva, Y Assenov, FS Domingues, M Albrecht
Nature protocols 7 (4), 670-685, 2012
3692012
A DNA methylation fingerprint of 1628 human samples
AF Fernandez, Y Assenov, JI Martin-Subero, B Balint, R Siebert, ...
Genome research 22 (2), 407-419, 2012
3192012
Maftools: efficient and comprehensive analysis of somatic variants in cancer
A Mayakonda, DC Lin, Y Assenov, C Plass, HP Koeffler
Genome research 28 (11), 1747-1756, 2018
2782018
Mutational dynamics between primary and relapse neuroblastomas
A Schramm, J Köster, Y Assenov, K Althoff, M Peifer, E Mahlow, ...
Nature genetics 47 (8), 872-877, 2015
2272015
The implications of alternative splicing in the ENCODE protein complement
ML Tress, PL Martelli, A Frankish, GA Reeves, JJ Wesselink, C Yeats, ...
Proceedings of the National Academy of Sciences 104 (13), 5495-5500, 2007
2262007
A Prognostic DNA Methylation Signature for Stage I Non–Small-Cell Lung Cancer
J Sandoval, J Mendez-Gonzalez, E Nadal, G Chen, FJ Carmona, ...
Journal of Clinical Oncology 31 (32), 4140-4147, 2013
2152013
Epigenetic profiling to classify cancer of unknown primary: a multicentre, retrospective analysis
S Moran, A Martínez-Cardús, S Sayols, E Musulén, C Balañá, ...
The Lancet Oncology 17 (10), 1386-1395, 2016
1962016
Intratumor DNA methylation heterogeneity reflects clonal evolution in aggressive prostate cancer
D Brocks, Y Assenov, S Minner, O Bogatyrova, R Simon, C Koop, ...
Cell reports 8 (3), 798-806, 2014
1882014
DNA methylation dynamics during B cell maturation underlie a continuum of disease phenotypes in chronic lymphocytic leukemia
CC Oakes, M Seifert, Y Assenov, L Gu, M Przekopowitz, AS Ruppert, ...
Nature genetics 48 (3), 253-264, 2016
1872016
DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats
D Brocks, CR Schmidt, M Daskalakis, HS Jang, NM Shah, D Li, J Li, ...
Nature genetics 49 (7), 1052, 2017
1282017
Evolution of DNA methylation is linked to genetic aberrations in chronic lymphocytic leukemia
CC Oakes, R Claus, L Gu, Y Assenov, J Hüllein, M Zucknick, M Bieg, ...
Cancer discovery 4 (3), 348-361, 2014
1212014
Quantitative comparison of DNA methylation assays for biomarker development and clinical applications
Nature Biotechnology 34, 726-737, 2016
1142016
A promoter DNA demethylation landscape of human hematopoietic differentiation
V Calvanese, AF Fernández, RG Urdinguio, B Suárez-Alvarez, C Mangas, ...
Nucleic acids research 40 (1), 116-131, 2012
1082012
Computational analysis of human protein interaction networks
F Ramirez, A Schlicker, Y Assenov, T Lengauer, M Albrecht
Proteomics 7 (15), 2541-2552, 2007
872007
Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues
F Simmer, AB Brinkman, Y Assenov, F Matarese, A Kaan, L Sabatino, ...
Epigenetics 7 (12), 1355-1367, 2012
682012
Strategies for analyzing bisulfite sequencing data
K Wreczycka, A Gosdschan, D Yusuf, B Gruening, Y Assenov, A Akalin
Journal of biotechnology 261, 105-115, 2017
672017
Pediatric T-lymphoblastic leukemia evolves into relapse by clonal selection, acquisition of mutations and promoter hypomethylation
JB Kunz, T Rausch, OR Bandapalli, J Eilers, P Pechanska, S Schuessele, ...
Haematologica, haematol. 2015.129692, 2015
612015
Molecular evolution of early-onset prostate cancer identifies molecular risk markers and clinical trajectories
C Gerhauser, F Favero, T Risch, R Simon, L Feuerbach, Y Assenov, ...
Cancer Cell 34 (6), 996-1011. e8, 2018
562018
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